Browse Element(s) Details


Os.18066.3.S1_x_at

Description gb:NM_187566.1
DB_XREF= gi:34902217
GEN=OJ1263H11.13
TID=Os.18066.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18066 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Unknown protein (OJ1263H11.13), mRNA.
PROD=Unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0284011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed
LOC_Os03g02870NANA3+1110205..1111709hypothetical protein
LOC_Os03g02890Os.54021.1.S1_at11/113+1115474..1119407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18066.3.S1_x_at--266--10211Chr03:1088880..1088904 (25 bp)
TATTATAGCTTCTAGTCCAACCTCC
LOC_Os03g02840
Os.18066.3.S1_x_at--633--3051Chr03:1088748..1088772 (25 bp)
AATCATGGATCTTGGCCAACGGCTG
LOC_Os03g02840
Os.18066.3.S1_x_at--239--5571Chr03:1088722..1088746 (25 bp)
GAAAGACAACTATAGCTGCATGGGC
LOC_Os03g02840
Os.18066.3.S1_x_at--1036--7111Chr03:1088660..1088684 (25 bp)
GTCATAACCGACAAGGCTGTAGAAA
LOC_Os03g02840
Os.18066.3.S1_x_at--236--2151Chr03:1088632..1088656 (25 bp)
ACAGAGAGGCTCGTGCTGCAGATTG
LOC_Os03g02840
Os.18066.3.S1_x_at--561--91Chr03:1088287..1088311 (25 bp)
ATTCAAGCTTGGGAAAACCACCAGA
LOC_Os03g02840
Os.18066.3.S1_x_at--441--5891Chr03:1087885..1087909 (25 bp)
GAGCTCGCGAGCAGGACAGGCTTTC
LOC_Os03g02840
Os.18066.3.S1_x_at--689--5651Chr03:1087871..1087895 (25 bp)
GACAGGCTTTCGAGCAAGTTGGCAG
LOC_Os03g02840
Os.18066.3.S1_x_at--392--1491Chr03:1087859..1087883 (25 bp)
AGCAAGTTGGCAGCTGCAAGGCACA
LOC_Os03g02840
Os.18066.3.S1_x_at--894--6191Chr03:1087817..1087841 (25 bp)
GAGGCCGCTGAGTCCAGGAAGAACC
LOC_Os03g02840
Os.18066.3.S1_x_at--313--1371Chr03:1087773..1087797 (25 bp)
AGAGCAGGCGGCTCAGATCCGGAAA
LOC_Os03g02840
Target Sequence 
TATTATAGCTTCTAGTCCAACCTCCTCTCGGACACCAACACCACAACGTAATGCAGAAATCAGTATTGGTGAATTTGGTC
CAAATAAGATGGAAATGTCTGAGGAGGAACTACAAATGAATACAAGAAAGGAAATCATGGATCTTGGCCAACGGCTGGGA
AAGACAACTATAGCTGCATGGGCTAGCAAGGAAGAGAAATCTACAACAAGTTTCGCAAATGTCATAACCGACAAGGCTGT
AGAAATCGACAGAGAGGCTCGTGCTGCAGATTGGGAGGAGGCAGAGAAAGCAAAATATCTTGCAAGGTTTCAGAGGGAAG
AGGTAAAGATTCAAGCTTGGGAAAACCACCAGAAAGCAAAAATTGAAGCTGAAATGAAGAGGATGGAGGCAAAGATAGAG
ATCAAGAGAGCTCGCGAGCAGGACAGGCTTTCGAGCAAGTTGGCAGCTGCAAGGCACAAGGCAGAGGCGAGGAGGGAGGC
CGCTGAGTCCAGGAAGAACCAAGAAGCAGCAAGAACTGAAGAGCAGGCGGCTCAGATCCGGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18066.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis