Browse Element(s) Details


Os.18066.1.S1_a_at

Description gb:AK121787.1
DB_XREF= gi:37991410
TID=Os.18066.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18066 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OJ1263H11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033094C20, full insert sequence.
FL= gb:AK058771.1 gb:AK121787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0284011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02790OsAffx.24944.1.S1_at9/113+1060536..1064717hypothetical protein
LOC_Os03g02800Os.45958.1.S1_at11/113+1067507..1072044no apical meristem, putative, expressed
LOC_Os03g02820Os.54100.1.S1_at9/113+1077680..1081214expressed protein
LOC_Os03g02820Os.55630.1.S1_at1/113+1077680..1081214expressed protein
LOC_Os03g02830Os.23229.1.S1_at11/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02830Os.52782.1.S1_at1/113+1081199..1084991LEM3 family/CDC50 family protein, expressed
LOC_Os03g02840Os.18066.3.S1_x_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02840Os.18066.1.S1_a_at11/113+1087587..1091390Remorin, C-terminal region family protein, expressed
LOC_Os03g02850Os.26571.1.S1_at10/113+1098132..1102122tobamovirus multiplication protein 3, putative, expressed
LOC_Os03g02860Os.20163.1.S1_at11/113+1103313..1105401copper chaperone, putative, expressed
LOC_Os03g02870NANA3+1110205..1111709hypothetical protein
LOC_Os03g02890Os.54021.1.S1_at11/113+1115474..1119407expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18066.1.S1_a_at--266--4731Chr03:1087714..1087738 (25 bp)
GCTGGTGCCTGTGATTCTTCACTCT
LOC_Os03g02840
Os.18066.1.S1_a_at--245--8831Chr03:1087703..1087727 (25 bp)
TGATTCTTCACTCTGCCATGATCAT
LOC_Os03g02840
Os.18066.1.S1_a_at--803--9191Chr03:1087690..1087714 (25 bp)
TGCCATGATCATCTGTTATTTGGGT
LOC_Os03g02840
Os.18066.1.S1_a_at--580--5531Chr03:1087661..1087685 (25 bp)
GAAAAATACTTGCTCCTTGCACGAC
LOC_Os03g02840
Os.18066.1.S1_a_at--941--9091Chr03:1087651..1087675 (25 bp)
TGCTCCTTGCACGACCATGTAAAAT
LOC_Os03g02840
Os.18066.1.S1_a_at--1070--5091Chr03:1087643..1087667 (25 bp)
GCACGACCATGTAAAATATTCGCTA
LOC_Os03g02840
Os.18066.1.S1_a_at--698--3111Chr03:1087629..1087653 (25 bp)
AATATTCGCTACTGGTTGGTTCATC
LOC_Os03g02840
Os.18066.1.S1_a_at--692--9331Chr03:1087624..1087648 (25 bp)
TCGCTACTGGTTGGTTCATCGTTCA
LOC_Os03g02840
Os.18066.1.S1_a_at--264--6751Chr03:1087611..1087635 (25 bp)
GTTCATCGTTCAGTGATCAATGCCA
LOC_Os03g02840
Os.18066.1.S1_a_at--161--7411Chr03:1087599..1087623 (25 bp)
GTGATCAATGCCAATGAGTCGCCAT
LOC_Os03g02840
Os.18066.1.S1_a_at--664--3031Chr03:1087593..1087617 (25 bp)
AATGCCAATGAGTCGCCATTTTTGT
LOC_Os03g02840
Target Sequence 
GCTGGTGCCTGTGATTCTTCACTCTGCCATGATCATCTGTTATTTGGGTAGAAGAAAAATACTTGCTCCTTGCACGACCA
TGTAAAATATTCGCTACTGGTTGGTTCATCGTTCAGTGATCAATGCCAATGAGTCGCCATTTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18066.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis