Browse Element(s) Details


Os.6115.1.S1_at

Description gb:AK069218.1
DB_XREF= gi:32979242
TID=Os.6115.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6115 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative receptor-like protein kinase (B1075D06.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023010O06, full insert sequence.
FL= gb:AK069218.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3309011/11Receptor-like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33080Os.40687.1.S1_at11/111+18513831..18520220Fimbrin-like protein 2, putative, expressed
LOC_Os01g33090Os.6115.1.S1_at11/111+18532023..18535067Receptor-like protein kinase, putative, expressed
LOC_Os01g33100OsAffx.19542.3.S1_x_at7/111+18537707..18541929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33110Os.49812.1.S1_at11/111+18556167..18559937Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6115.1.S1_at--899--1951Chr01:18534521..18534545 (25 bp)
ACTGAAAGTTGCTCTCGCTTGCGTT
LOC_Os01g33090
Os.6115.1.S1_at--609--3031Chr01:18534552..18534576 (25 bp)
AATCCAGAGCGAAGGCCCTCTATGA
LOC_Os01g33090
Os.6115.1.S1_at--143--6211Chr01:18534575..18534599 (25 bp)
GAGGCATGTCGCAGAAACCCTGGAT
LOC_Os01g33090
Os.6115.1.S1_at--421--7771Chr01:18534698..18534722 (25 bp)
GGTGACTCAAGCTTCATCAGTTCGC
LOC_Os01g33090
Os.6115.1.S1_at--610--3171Chr01:18534730..18534754 (25 bp)
AATTGTCATTTTCGCAGGACCCTCA
LOC_Os01g33090
Os.6115.1.S1_at--462--9491Chr01:18534758..18534782 (25 bp)
TCTGCTCCGCTCTTAACATGTTAGA
LOC_Os01g33090
Os.6115.1.S1_at--561--6791Chr01:18534813..18534837 (25 bp)
GTTATGACTATTGTGCTTGCCTATA
LOC_Os01g33090
Os.6115.1.S1_at--628--9811Chr01:18534859..18534883 (25 bp)
TAACTGTGTATGCTTGCAGCTTGCT
LOC_Os01g33090
Os.6115.1.S1_at--992--5051Chr01:18534874..18534898 (25 bp)
GCAGCTTGCTCTCTGATAGTCTGAA
LOC_Os01g33090
Os.6115.1.S1_at--595--2491Chr01:18534942..18534966 (25 bp)
AACAGAGCCACGGATGTCATTGAGA
LOC_Os01g33090
Os.6115.1.S1_at--207--4191Chr01:18535021..18535045 (25 bp)
CCCTCTCCTTGTACTACTTAATTGG
LOC_Os01g33090
Target Sequence 
ACTGAAAGTTGCTCTCGCTTGCGTTCAGGCCAATCCAGAGCGAAGGCCCTCTATGAGGCATGTCGCAGAAACCCTGGATC
ACCTCAATGGTTCAGGCTAGAAAAGTAGTATCATGGAAGGNGGTCATTTTTTAGAGCATTTGATGGTTGTACAGCTCAAG
GAAGGCAAGGAAGCTTAGGTGACTCAAGCTTCATCAGTTCGCTATGTAAAATTGTCATTTTCGCAGGACCCTCAGATTCT
GCTCCGCTCTTAACATGTTAGATAGCCNTTTTCTGTTAGCTTGCTATCATGAGTTATGACTATTGTGCTTGCCTATAAGT
CATGGGAATGGGTGAATTTAACTGTGTATGCTTGCAGCTTGCTCTCTGATAGTCTGAATGAACAAGAACTGATAGGATTA
TATGGAGCACTTTGTTTGGAGAACAGAGCCACGGATGTCATTGAGATAGGGGTGGCAAATAGTTATTTGCCAAATCTAAA
AGTGGCAAATAGTTAAAACCCCCTCTCCTTGTACTACTTAATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6115.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis