Browse Element(s) Details


Os.49812.1.S1_at

Description gb:AK111708.1
DB_XREF= gi:37988371
TID=Os.49812.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022C01, full insert sequence.
FL= gb:AK111708.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3311011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33090Os.6115.1.S1_at11/111+18532023..18535067Receptor-like protein kinase, putative, expressed
LOC_Os01g33100OsAffx.19542.3.S1_x_at7/111+18537707..18541929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33110Os.49812.1.S1_at11/111+18556167..18559937Protein kinase domain containing protein, expressed
LOC_Os01g33120OsAffx.11293.1.S1_at10/111+18560932..18563852hypothetical protein
LOC_Os01g33130OsAffx.23483.2.S1_at10/111+18564259..18565286hypothetical protein
LOC_Os01g33130OsAffx.23483.1.S1_x_at5/111+18564259..18565286hypothetical protein
LOC_Os01g33136OsAffx.3613.1.S1_x_at3/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.27522.1.S1_x_at2/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.278.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.3613.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136Os.27101.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33142Os.31929.3.S1_x_at2/111+18573558..18576955hypothetical protein
LOC_Os01g33142Os.23706.1.A1_x_at1/111+18573558..18576955hypothetical protein
LOC_Os01g33150NANA1+18580831..18582406retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49812.1.S1_at--649--6471Chr01:18559442..18559466 (25 bp)
GATAAACGTCTTCCAGTACCTGCAG
LOC_Os01g33110
Os.49812.1.S1_at--556--5751Chr01:18559481..18559505 (25 bp)
GACGTGAATAGGTGTCTCTCCGTGG
LOC_Os01g33110
Os.49812.1.S1_at--87--7551Chr01:18559502..18559526 (25 bp)
GTGGCGTTTGACTGCCTACTTCCAT
LOC_Os01g33110
Os.49812.1.S1_at--534--6011Chr01:18559535..18559559 (25 bp)
GAGAGGCCAACCATGTGTCAAGTTT
LOC_Os01g33110
Os.49812.1.S1_at--271--1211Chr01:18559555..18559579 (25 bp)
AGTTTATCAACGACTTGCCATCTGA
LOC_Os01g33110
Os.49812.1.S1_at--274--9191Chr01:18559570..18559594 (25 bp)
TGCCATCTGAAGTTACCTTGCTTAT
LOC_Os01g33110
Os.49812.1.S1_at--62--10451Chr01:18559629..18559653 (25 bp)
TTAGGAGCCACCACTCTTAAGGATA
LOC_Os01g33110
Os.49812.1.S1_at--609--4551Chr01:18559700..18559724 (25 bp)
GCGCCAATGCTAGGTGGGTATTCAA
LOC_Os01g33110
Os.49812.1.S1_at--817--3891Chr01:18559741..18559765 (25 bp)
CTGTGTGGTATTTGATGCGGCTATC
LOC_Os01g33110
Os.49812.1.S1_at--1069--1091Chr01:18559799..18559823 (25 bp)
AGTGTGTGTCATACTGATCTGATCA
LOC_Os01g33110
Os.49812.1.S1_at--611--371Chr01:18559820..18559844 (25 bp)
ATCACTTCTACTCCGTTCAATATTG
LOC_Os01g33110
Target Sequence 
GATAAACGTCTTCCAGTACCTGCAGATGATGAAGCAGACGACGTGAATAGGTGTCTCTCCGTGGCGTTTGACTGCCTACT
TCCATCGCCGCAAGAGAGGCCAACCATGTGTCAAGTTTATCAACGACTTGCCATCTGAAGTTACCTTGCTTATCTTAAAA
TCTTTTTTATAATAATGAGAGGCTCCCTTAGGAGCCACCACTCTTAAGGATAACAAATATGTTCATGGACTCTCATGTAA
AATAATACTATGTGCAATGCGCCAATGCTAGGTGGGTATTCAACCAGGGTGGTTTCATCCTGTGTGGTATTTGATGCGGC
TATCTGGAAATTTTAGTAAACAATACTAAAACATAGAAGTGTGTGTCATACTGATCTGATCACTTCTACTCCGTTCAATA
TTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49812.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis