Browse Element(s) Details


OsAffx.23483.2.S1_at

Description tigr:9629.m03102
TID=OsAffx.23483.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3313010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33100OsAffx.19542.3.S1_x_at7/111+18537707..18541929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33110Os.49812.1.S1_at11/111+18556167..18559937Protein kinase domain containing protein, expressed
LOC_Os01g33120OsAffx.11293.1.S1_at10/111+18560932..18563852hypothetical protein
LOC_Os01g33130OsAffx.23483.2.S1_at10/111+18564259..18565286hypothetical protein
LOC_Os01g33130OsAffx.23483.1.S1_x_at5/111+18564259..18565286hypothetical protein
LOC_Os01g33136OsAffx.3613.1.S1_x_at3/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.27522.1.S1_x_at2/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.278.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.3613.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136Os.27101.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33142Os.31929.3.S1_x_at2/111+18573558..18576955hypothetical protein
LOC_Os01g33142Os.23706.1.A1_x_at1/111+18573558..18576955hypothetical protein
LOC_Os01g33150NANA1+18580831..18582406retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33160NANA1+18586411..18589398hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23483.2.S1_at--288--4351Chr01:18564292..18564316 (25 bp)
CCAGGATTCACTCCAAATGACAGTT
LOC_Os01g33130
OsAffx.23483.2.S1_at--955--3271NONE
CAAATGACAGTTGGAGGGCGAACGC
NONE
OsAffx.23483.2.S1_at--769--5391Chr01:18564845..18564869 (25 bp)
GAACGCGGAGAATAAATCCCTGGTG
LOC_Os01g33130
OsAffx.23483.2.S1_at--423--5511Chr01:18564873..18564897 (25 bp)
GAAAATAAATCTCTCCGTGCCAACT
LOC_Os01g33130
OsAffx.23483.2.S1_at--194--4251Chr01:18564887..18564911 (25 bp)
CCGTGCCAACTTGGAGAAGGCGAAT
LOC_Os01g33130
OsAffx.23483.2.S1_at--632--2951Chr01:18564903..18564927 (25 bp)
AAGGCGAATCAGAGGGATGCTGAAC
LOC_Os01g33130
OsAffx.23483.2.S1_at--1134--4751Chr01:18565095..18565119 (25 bp)
GCTCCGGGTGATGACAGGTCCGCTT
LOC_Os01g33130
OsAffx.23483.2.S1_at--276--2131Chr01:18565108..18565132 (25 bp)
ACAGGTCCGCTTTTGACTTTACTGA
LOC_Os01g33130
OsAffx.23483.2.S1_at--809--2031Chr01:18565123..18565147 (25 bp)
ACTTTACTGAGTGGACGCAAGATGC
LOC_Os01g33130
OsAffx.23483.2.S1_at--839--1131Chr01:18565157..18565181 (25 bp)
AGTCGTCGAAGTGGCTGGCGCGTAC
LOC_Os01g33130
OsAffx.23483.2.S1_at--468--9091Chr01:18565216..18565240 (25 bp)
TGCTCAGCTTGCTCCATGAACATGG
LOC_Os01g33130
Target Sequence 
CCAGGATTCACTCCAAATGACAGTTGGAGGGCGAACGCGGAGAATAAATCCCTGGTGGGAGAAAATAAATCTCTCCGTGC
CAACTTGGAGAAGGCGAATCAGAGGGATGCTGAACAGGAAGGGCAGCTTGCAGCGGCCGAAGAAAAGATCAAATCCCTTG
AAGCCCGGCTTGGCTCGGTGGAAGCCGCTGCTGAAGCTTTGGTGCCAGCGACGGAGTCCGCCAGACATGCTTGCTACACC
CTTCGGCTGGCCCTCACTGACCTTGCAGCACGTGCGGAGGGCGCTCCGGGTGATGACAGGTCCGCTTTTGACTTTACTGA
GTGGACGCAAGATGCGGCCGGCTCAGTCGTCGAAGTGGCTGGCGCGTACGGCGACTGTTGTGCGCGAGTTGCCGTGGGGT
TCGTGCTCAGCTTGCTCCATGAACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23483.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis