Browse Element(s) Details


Os.6438.1.S1_a_at

Description gb:AK069894.1
DB_XREF= gi:32979918
TID=Os.6438.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6438 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OJ1126_G08.9 (OJ1126_G08.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023037A04, full insert sequence.
FL= gb:AK069894.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3122011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g31160OsAffx.1198.1.S1_at11/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.38751.1.A1_at2/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.28492.1.S1_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160Os.49802.1.S2_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31160OsAffx.30280.1.S1_x_at1/111+17364579..17369123retrotransposon protein, putative, unclassified
LOC_Os01g31170NANA1+17370713..17371162hypothetical protein
LOC_Os01g31180NANA1+17372372..17374191retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g31190NANA1+17381361..17385224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31200NANA1+17386130..17388895retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31210OsAffx.23460.1.S1_at8/111+17391926..17392381hypothetical protein
LOC_Os01g31220Os.6438.1.S1_a_at11/111+17393803..17397678expressed protein
LOC_Os01g31220Os.6438.2.S1_x_at11/111+17393803..17397678expressed protein
LOC_Os01g31230OsAffx.22633.1.S1_at1/111+17404852..17408465retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31240Os.24648.1.A1_at1/111+17409517..17413264retrotransposon, putative, centromere-specific
LOC_Os01g31250NANA1+17418308..17419549retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g31260NANA1+17420345..17423747retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6438.1.S1_a_at--802--331Chr01:17394354..17394378 (25 bp)
ATACAAAGAGCATTTCCAGAACAGC
LOC_Os01g31220
Os.6438.1.S1_a_at--805--4951Chr01:17394345..17394369 (25 bp)
GCATTTCCAGAACAGCAGACTTGTT
LOC_Os01g31220
Os.6438.1.S1_a_at--711--3551Chr01:17394235..17394259 (25 bp)
CATCTGATCCTATCATCGAAGATGG
LOC_Os01g31220
Os.6438.1.S1_a_at--1122--10391Chr01:17394207..17394231 (25 bp)
TTTTGGCATGTTTCAACGAATTGGT
LOC_Os01g31220
Os.6438.1.S1_a_at--1108--10491Chr01:17394196..17394220 (25 bp)
TTCAACGAATTGGTCTAGCGAGATT
LOC_Os01g31220
Os.6438.1.S1_a_at--710--7151Chr01:17394184..17394208 (25 bp)
GTCTAGCGAGATTGGATGCCTCAGT
LOC_Os01g31220
Os.6438.1.S1_a_at--401--6051Chr01:17394177..17394201 (25 bp)
GAGATTGGATGCCTCAGTTTTCAAT
LOC_Os01g31220
Os.6438.1.S1_a_at--315--4451Chr01:17394167..17394191 (25 bp)
GCCTCAGTTTTCAATGGCTACACTC
LOC_Os01g31220
Os.6438.1.S1_a_at--245--3211Chr01:17394156..17394180 (25 bp)
CAATGGCTACACTCAGATGTCATAT
LOC_Os01g31220
Os.6438.1.S1_a_at--562--7131Chr01:17394138..17394162 (25 bp)
GTCATATGTTCAGATATCAGGCTCA
LOC_Os01g31220
Os.6438.1.S1_a_at--353--8791Chr01:17394132..17394156 (25 bp)
TGTTCAGATATCAGGCTCAATGTTG
LOC_Os01g31220
Target Sequence 
ATACAAAGAGCATTTCCAGAACAGCAGACTTGTTGAANCCGTGTTGGNATTTGTATTGGGAGCTACCTCCNAGTTGCTGG
TCCATCCNTTANCCCACCAAACAAGATATGACCCNAGCCCGTGCATCTGATCCTATCATCGAAGATGGNTCGTTTTGGCA
TGTTTCAACGAATTGGTCTAGCGAGATTGGATGCCTCAGTTTTCAATGGCTACACTCAGATGTCATATGTTCAGATATCA
GGCTCAATGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6438.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis