Browse Element(s) Details


Os.6670.1.S1_at

Description gb:AK065804.1
DB_XREF= gi:32975822
TID=Os.6670.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.6670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037L05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037L05, full insert sequence.
FL= gb:AK065804.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4977011/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49720Os.11854.1.S1_at10/113+28254159..28257104plastid-lipid associated protein PAP, putative, expressed
LOC_Os03g49730Os.9642.1.S1_at11/113+28257536..28261285MYND finger family protein, expressed
LOC_Os03g49740OsAffx.25647.2.S1_at11/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_x_at4/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_at3/113+28262020..28262777hypothetical protein
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed
LOC_Os03g49770Os.6670.1.S1_at11/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49770Os.57422.1.S1_x_at10/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49780OsAffx.25649.1.S1_at11/113+28292772..28293512hypothetical protein
LOC_Os03g49790OsAffx.25844.2.S1_at1/113+28294606..28295892Pattern formation protein EMB30, putative, expressed
LOC_Os03g49800Os.22464.1.S1_at11/113+28307285..28311784Phosphatidylinositol-4-phosphate 5-kinase 1, putative, expressed
LOC_Os03g49810OsAffx.13426.1.S1_at9/113+28313027..28314013hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6670.1.S1_at--731--2551Chr03:28287226..28287250 (25 bp)
AACTGCCACCAACAGACTCTAGATT
LOC_Os03g49770
Os.6670.1.S1_at--836--71Chr03:28287248..28287272 (25 bp)
ATTGCGACCAGATCAGCGATGCCTA
LOC_Os03g49770
Os.6670.1.S1_at--309--6471Chr03:28287915..28287939 (25 bp)
GATAAAGCTACCGACACATACCGCT
LOC_Os03g49770
Os.6670.1.S1_at--244--311Chr03:28287932..28287956 (25 bp)
ATACCGCTACCTTGGTGGTTACTGG
LOC_Os03g49770
Os.6670.1.S1_at--107--8211Chr03:28287980..28288004 (25 bp)
GGAAGGCTGTCCAGATATCTTCGGA
LOC_Os03g49770
Os.6670.1.S1_at--919--9511Chr03:28288066..28288090 (25 bp)
TCTCTGCTTTTATTCTTTCTGTGGG
LOC_Os03g49770
Os.6670.1.S1_at--80--10291Chr03:28288081..28288105 (25 bp)
TTTCTGTGGGATCACTTGATTCCAG
LOC_Os03g49770
Os.6670.1.S1_at--540--5191Chr03:28288129..28288153 (25 bp)
GCAATTAAACGGGTCTTGGCCTGTA
LOC_Os03g49770
Os.6670.1.S1_at--832--2851Chr03:28288195..28288219 (25 bp)
AAGTGAGGTTCGTCCAAAGTGTCGC
LOC_Os03g49770
Os.6670.1.S1_at--311--2311Chr03:28288210..28288234 (25 bp)
AAAGTGTCGCTTCGAATCAGTGTTT
LOC_Os03g49770
Os.6670.1.S1_at--403--10531Chr03:28288261..28288285 (25 bp)
TTCAGAGTGCTTTATCATAGGCCAT
LOC_Os03g49770
Target Sequence 
AACTGCCACCAACAGACTCTAGATTGCGACCAGATCAGCGATGCCTAGAGAATGGTGAGTATGAAAGAGCAAATGCTGAG
AAGTTGAGGCTTGAACAGAGACAACGACAGGCACGGAAGATGCAGGAGAGCGGGTGGAAACCTCGGTGGTTTGCAAAAGA
TAAAGCTACCGACACATACCGCTACCTTGGTGGTTACTGGGAATCCAGAGAAAAGGGCAGCTGGGAAGGCTGTCCAGATA
TCTTCGGACAAGTTCCTAACGATTTGATGATAACTGACTAGGCTTTGAGTAGGTTACAGGTCTTCTGNTTCTCTGCTTTT
ATTCTTTCTGTGGGATCACTTGATTCCAGATTTTTTAGCGGTTTATATTAGAGCAATTAAACGGGTCTTGGCCTGTAAGG
AGAGGCTGTGCTTCAGANATATTGTTTTCGTACATAATAAGTGAGGTTCGTCCAAAGTGTCGCTTCGAATCAGTGTTTTC
TTGTGAGGATTGCATGCTCACAAGTTCAGAGTGCTTTATCATAGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis