Browse Element(s) Details


Os.6849.1.S1_at

Description gb:AK070923.1
DB_XREF= gi:32980946
TID=Os.6849.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6849 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023069E15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023069E15, full insert sequence.
FL= gb:AK070923.1 gb:AK063445.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5349011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein
LOC_Os03g53450OsAffx.25702.1.S1_at11/113+30612242..30613469hypothetical protein
LOC_Os03g53470OsAffx.25703.1.S1_x_at4/113+30615632..30616012hypothetical protein
LOC_Os03g53480OsAffx.13481.2.S1_at11/113+30617076..30619258hypothetical protein
LOC_Os03g53490Os.6849.1.S2_at11/113+30627195..30629614pentatricopeptide, putative, expressed
LOC_Os03g53490Os.6849.1.S1_at11/113+30627195..30629614pentatricopeptide, putative, expressed
LOC_Os03g53500Os.50757.1.S2_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53500Os.50757.1.S1_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53510Os.52844.1.S1_at11/113+30639885..30642889transducin family protein, putative, expressed
LOC_Os03g53520Os.20269.1.S1_at11/113+30644778..30646438expressed protein
LOC_Os03g53524NANA3+30651092..30651400hypothetical protein
LOC_Os03g53530Os.25518.1.S1_at11/113+30651649..30655069WD-repeat protein 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6849.1.S1_at--1075--6191Chr03:30628391..30628415 (25 bp)
GAGGCTTGATGTCGCTCATGACGAT
LOC_Os03g53490
Os.6849.1.S1_at--310--3551Chr03:30628464..30628488 (25 bp)
CATCGACGCCTTCCATAAGATGGAT
LOC_Os03g53490
Os.6849.1.S1_at--880--2951Chr03:30628513..30628537 (25 bp)
AAGGCCATGAATGTGCTCCTGGACA
LOC_Os03g53490
Os.6849.1.S1_at--1120--9091Chr03:30628526..30628550 (25 bp)
TGCTCCTGGACACACTGTGCAAGGA
LOC_Os03g53490
Os.6849.1.S1_at--572--5171Chr03:30628567..30628591 (25 bp)
GCAAGAGGCGTCTTCCAAGAGCTGA
LOC_Os03g53490
Os.6849.1.S1_at--1045--5491Chr03:30628614..30628638 (25 bp)
GAACAGCTTCAATACTCTCGTGCAT
LOC_Os03g53490
Os.6849.1.S1_at--458--331Chr03:30628625..30628649 (25 bp)
ATACTCTCGTGCATGGTTGGTGTAA
LOC_Os03g53490
Os.6849.1.S1_at--989--1511Chr03:30628694..30628718 (25 bp)
AGCAGCATGGATTCAGTCCTTCAGT
LOC_Os03g53490
Os.6849.1.S1_at--726--1091Chr03:30628716..30628740 (25 bp)
AGTGGTGACTTATACCAGCCTGGTA
LOC_Os03g53490
Os.6849.1.S1_at--922--1391Chr03:30628769..30628793 (25 bp)
AGACTGTTTACGCTCTCTTGGACGA
LOC_Os03g53490
Os.6849.1.S1_at--722--5431Chr03:30628868..30628892 (25 bp)
GAACGCGAGAAGCTTTGGATACCTT
LOC_Os03g53490
Target Sequence 
GAGGCTTGATGTCGCTCATGACGATGACAAAGGTGATGAGAAGGCTTGCTGGGGCAAGTCGATGGACCGAGGCCATCGAC
GCCTTCCATAAGATGGATCGGTTTGGAGTTGTGAAGGATACAAAGGCCATGAATGTGCTCCTGGACACACTGTGCAAGGA
GAGGAGCGTGAAGCGCGCAAGAGGCGTCTTCCAAGAGCTGAGGGGAACAATACCTCCAGACGAGAACAGCTTCAATACTC
TCGTGCATGGTTGGTGTAAGGCAAGGATGCTGAAGGAAGCTCTAGACACAATGGAGGAGATGAAGCAGCATGGATTCAGT
CCTTCAGTGGTGACTTATACCAGCCTGGTAGAAGCATACTGCATGGAGAAAGATTTTCAGACTGTTTACGCTCTCTTGGA
CGAGATGCGCAAGAGGCGGTGTCCCCCAAATGTTGTTACATATACCATTTTGATGCATGCACTGGGGAAGGCTGGGAGAA
CGCGAGAAGCTTTGGATACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6849.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis