Browse Element(s) Details


Os.50757.1.S1_at

Description gb:AK058367.1
DB_XREF= gi:32968385
TID=Os.50757.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50757 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033023K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-G01, full insert sequence.
FL= gb:AK101069.1 gb:AK058367.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5350011/11Helicase conserved C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53430OsAffx.20729.1.S1_x_at3/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53430OsAffx.1674.1.S1_at1/113+30600544..30605291retrotransposon protein, putative, unclassified
LOC_Os03g53440NANA3+30610275..30611063hypothetical protein
LOC_Os03g53450OsAffx.25702.1.S1_at11/113+30612242..30613469hypothetical protein
LOC_Os03g53470OsAffx.25703.1.S1_x_at4/113+30615632..30616012hypothetical protein
LOC_Os03g53480OsAffx.13481.2.S1_at11/113+30617076..30619258hypothetical protein
LOC_Os03g53490Os.6849.1.S2_at11/113+30627195..30629614pentatricopeptide, putative, expressed
LOC_Os03g53490Os.6849.1.S1_at11/113+30627195..30629614pentatricopeptide, putative, expressed
LOC_Os03g53500Os.50757.1.S2_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53500Os.50757.1.S1_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53510Os.52844.1.S1_at11/113+30639885..30642889transducin family protein, putative, expressed
LOC_Os03g53520Os.20269.1.S1_at11/113+30644778..30646438expressed protein
LOC_Os03g53524NANA3+30651092..30651400hypothetical protein
LOC_Os03g53530Os.25518.1.S1_at11/113+30651649..30655069WD-repeat protein 4, putative, expressed
LOC_Os03g53540Os.55059.1.S1_at11/113+30658237..30659145expressed protein
LOC_Os03g53550Os.31662.1.S1_at11/113+30661923..30663971retrotransposon protein, putative, unclassified, expressed
LOC_Os03g53560OsAffx.19542.3.S1_x_at6/113+30664021..30668243retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0016070biological_processRNA metabolism
GO:0005739cellular_componentmitochondrion
GO:0004004molecular_functionATP-dependent RNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50757.1.S1_at--1033--5831Chr03:30638150..30638174 (25 bp)
GACCTCTTAGATTGTTGGCACGGGA
LOC_Os03g53500
Os.50757.1.S1_at--277--6231Chr03:30638023..30638047 (25 bp)
GATGGCCGACATGACAACTGAGTAT
LOC_Os03g53500
Os.50757.1.S1_at--83--7691Chr03:30637783..30637807 (25 bp)
GGGTTTTTCATTCACTCGTGCACTT
LOC_Os03g53500
Os.50757.1.S1_at--998--5911Chr03:30637740..30637764 (25 bp)
GAGCTTCATGTTTGTGGTGACCCAG
LOC_Os03g53500
Os.50757.1.S1_at--7--8671Chr03:30637714..30637738 (25 bp)
TGTGGTTCCTCTCATTCAGCGAATT
LOC_Os03g53500
Os.50757.1.S1_at--665--1631Chr03:30637697..30637721 (25 bp)
AGCGAATTCTCGAACCTACTGGTGA
LOC_Os03g53500
Os.50757.1.S1_at--1038--8891Chr03:30637024..30637048 (25 bp)
TGAGAGGCTATCTCCATTGGTTCCT
LOC_Os03g53500
Os.50757.1.S1_at--447--31Chr03:30637009..30637033 (25 bp)
ATTGGTTCCTCTGAAGACTACTCTC
LOC_Os03g53500
Os.50757.1.S1_at--134--3771Chr03:30636989..30637013 (25 bp)
CTCTCGGGTCTTTCTCTAACATTAA
LOC_Os03g53500
Os.50757.1.S1_at--1138--7051Chr03:30635735..30635759 (25 bp)
GTAAGCATCTTTGTTCTGTAGTCTA
LOC_Os03g53500
Os.50757.1.S1_at--4--10071Chr03:30635717..30635741 (25 bp)
TAGTCTATGGCTCATTGCCACCAGA
LOC_Os03g53500
Target Sequence 
GACCTCTTAGATTGTTGGCACGGGAGGTAGGTCAAAGACTAAACAAAGCTAATGTCCCTTGTAACTTAATTACTGGACAA
GAAAGGGAGGAAATTGAAGGTGCAAAGCATAGCTCAGTGACAGTTGAGATGGCCGACATGACAACTGAGTATCAATGTGC
CGTTATTGATGAAATTCAGATGGTTGGCTGTAGATCGAGGGGTTTTTCATTCACTCGTGCACTTCTGGGGCTTTGTTCAG
ATGAGCTTCATGTTTGTGGTGACCCAGCTGTGGTTCCTCTCATTCAGCGAATTCTCGAACCTACTGGTGATGTGGTTACG
GTCCAATATTATGAGAGGCTATCTCCATTGGTTCCTCTGAAGACTACTCTCGGGTCTTTCTCTAACATTAAGGCAGGGGA
TTGCGTAAATGTAACGTTCTCACGACGATCTATCTATATGCTTAAGAGAAGAATTGAAATGGGGGGTAAGCATCTTTGTT
CTGTAGTCTATGGCTCATTGCCACCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis