Browse Element(s) Details


Os.55059.1.S1_at

Description gb:AK107396.1
DB_XREF= gi:32992605
TID=Os.55059.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55059 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D05, full insert sequence.
FL= gb:AK107396.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5354011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g53500Os.50757.1.S2_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53500Os.50757.1.S1_at11/113+30630093..30639638Helicase conserved C-terminal domain containing protein, expressed
LOC_Os03g53510Os.52844.1.S1_at11/113+30639885..30642889transducin family protein, putative, expressed
LOC_Os03g53520Os.20269.1.S1_at11/113+30644778..30646438expressed protein
LOC_Os03g53524NANA3+30651092..30651400hypothetical protein
LOC_Os03g53530Os.25518.1.S1_at11/113+30651649..30655069WD-repeat protein 4, putative, expressed
LOC_Os03g53540Os.55059.1.S1_at11/113+30658237..30659145expressed protein
LOC_Os03g53550Os.31662.1.S1_at11/113+30661923..30663971retrotransposon protein, putative, unclassified, expressed
LOC_Os03g53560OsAffx.19542.3.S1_x_at6/113+30664021..30668243retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g53570NANA3+30669535..30670311retrotransposon protein, putative, unclassified
LOC_Os03g53580OsAffx.25704.1.S1_at10/113+30673727..30675773expressed protein
LOC_Os03g53590Os.11603.1.S1_at11/113+30677366..30683868expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55059.1.S1_at--1016--1071Chr03:30658690..30658714 (25 bp)
AGGGCATGTGCCAGATGCTGCGCAC
LOC_Os03g53540
Os.55059.1.S1_at--496--7791Chr03:30658829..30658853 (25 bp)
GGTCCAGCTCATCTGATCGGGCGAT
LOC_Os03g53540
Os.55059.1.S1_at--125--511Chr03:30658844..30658868 (25 bp)
ATCGGGCGATCGATCATCGCCATAC
LOC_Os03g53540
Os.55059.1.S1_at--313--9391Chr03:30658853..30658877 (25 bp)
TCGATCATCGCCATACATGTACAGC
LOC_Os03g53540
Os.55059.1.S1_at--1039--4431Chr03:30658862..30658886 (25 bp)
GCCATACATGTACAGCGAGCGCGCG
LOC_Os03g53540
Os.55059.1.S1_at--1070--6731Chr03:30658915..30658939 (25 bp)
GTTCTTGTGACGAGGTGCACGCAGC
LOC_Os03g53540
Os.55059.1.S1_at--319--1651Chr03:30658937..30658961 (25 bp)
AGCGCACGACGCATGCAATCTCCAT
LOC_Os03g53540
Os.55059.1.S1_at--1139--10551Chr03:30658969..30658993 (25 bp)
TTCTTCCTCTCGCATCTAGTAGAGA
LOC_Os03g53540
Os.55059.1.S1_at--51--3131Chr03:30659037..30659061 (25 bp)
AATTTTGATCAGGTGGTGTTAACCA
LOC_Os03g53540
Os.55059.1.S1_at--75--2651Chr03:30659057..30659081 (25 bp)
AACCACGGTGAAAGAGGGTGCACAT
LOC_Os03g53540
Os.55059.1.S1_at--488--7711Chr03:30659072..30659096 (25 bp)
GGGTGCACATATGTGTAATCAAGTT
LOC_Os03g53540
Target Sequence 
AGGGCATGTGCCAGATGCTGCGCACCGCCTCCTGGAAGCAGCGGCGGCGCGCCTCCGGATCCTCCTCGTCGTCGTCGTCG
CCGTCGCCGCGAGCCGCGCCCGAGCGCCACCACCACCACCGCGCGCCGTCGACGCTCTCGGTCCAGCTCATCTGATCGGG
CGATCGATCATCGCCATACATGTACAGCGAGCGCGCGCGCGCGCGGTGGCGTGGCGTGGCGTGCGGTTCTTGTGACGAGG
TGCACGCAGCGCACGACGCATGCAATCTCCATCGTCTTCTTCTTCCTCTCGCATCTAGTAGAGAGACTAGCAGTAGTAAT
ATACATAAGGTTTCTATGTGAATTTTGAATTTTGATCAGGTGGTGTTAACCACGGTGAAAGAGGGTGCACATATGTGTAA
TCAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55059.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis