Browse Element(s) Details


Os.7004.1.S1_at

Description gb:CB661602
DB_XREF= gi:29665327
DB_XREF=OSJNEd04L16.r
CLONE=OSJNEd04L16
TID=Os.7004.1
CNT=9
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.7004 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_186830.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1334011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13300OsAffx.31725.1.S1_at11/1112+7417264..7418862Leucine Rich Repeat family protein
LOC_Os12g13300Os.51067.1.S1_x_at2/1112+7417264..7418862Leucine Rich Repeat family protein
LOC_Os12g13310NANA12+7420523..7424739Protein kinase domain containing protein
LOC_Os12g13320Os.11405.1.S1_at11/1112+7427980..7432087Argininosuccinate synthase, chloroplast precursor, putative, expressed
LOC_Os12g13330NANA12+7434390..7436724Zinc knuckle family protein
LOC_Os12g13340Os.7004.1.S1_at11/1112+7438457..7443509expressed protein
LOC_Os12g13350Os.26063.1.S1_at1/1112+7450551..7455232retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g13360OsAffx.7579.1.S1_at10/1112+7458834..7460279Cullin-1, putative
LOC_Os12g13370NANA12+7465636..7466333hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7004.1.S1_at--534--5191Chr12:7438990..7439014 (25 bp)
GCAATCCTAAGCATGATCGGCGACC
LOC_Os12g13340
Os.7004.1.S1_at--75--10251Chr12:7438839..7438863 (25 bp)
TTGGGAACCCAAACAGTGCCAGGTA
LOC_Os12g13340
Os.7004.1.S1_at--881--9871Chr12:7438816..7438840 (25 bp)
TACAGGCTCCTCCATGAGGTTTGGA
LOC_Os12g13340
Os.7004.1.S1_at--57--1071Chr12:7438765..7438789 (25 bp)
AGGGTGTGTCCTAAGCATCAGTGAT
LOC_Os12g13340
Os.7004.1.S1_at--210--1491Chr12:7438713..7438737 (25 bp)
AGCAATCTCTTTCTGATAGTCTCCA
LOC_Os12g13340
Os.7004.1.S1_at--232--9211Chr12:7438692..7438716 (25 bp)
TCCAGGTAATTTCCAGCTCTCTTCG
LOC_Os12g13340
Os.7004.1.S1_at--305--4971Chr12:7438579..7438603 (25 bp)
GCATCTTGCTCCAATGTGTTACCAG
LOC_Os12g13340
Os.7004.1.S1_at--384--1591Chr12:7438556..7438580 (25 bp)
AGCTCCCTAGATTTCCCATGAATTT
LOC_Os12g13340
Os.7004.1.S1_at--88--10531Chr12:7438533..7438557 (25 bp)
TTCAGTCACACTATTACCAGGCAGA
LOC_Os12g13340
Os.7004.1.S1_at--418--3151Chr12:7438502..7438526 (25 bp)
AATTCAGCAAAATCTCAGCCGTTCA
LOC_Os12g13340
Os.7004.1.S1_at--1093--3371Chr12:7438487..7438511 (25 bp)
CAGCCGTTCATCTTGTAATCCATTG
LOC_Os12g13340
Target Sequence 
GCAATCCTAAGCATGATCGGCGACCCCAGGAAGAGCGGGTCGGCCATCCTCCGCAAGTCCAACACGAGCGACGACGAGCT
GGATGAGCTGAGCTCGCCATTGACCTTCATCTCCAAGGCTTNGTCGAACCCGCTCGCGAAGCTGAAGCAGATTGGGAACC
CAAACAGTGCCAGGTACAGGCTCCTCCATGAGGTTTGGAAGCTGGATGACCAGTAGTGACCAGTGAGGGTGTGTCCTAAG
CATCAGTGATGCTTTGNTTCTCTACTGTACATACACAAGCAATCTCTTTCTGATAGTCTCCAGGTAATTTCCAGCTCTCT
TCGGAAGCAAGAACAGAAGAAGAAATTTCAAGGGTTGGGTTAAAAGTAATATTTTTGGTGCTTCCATGTATGTAAGAATG
CTGTATAACTTGCATCTTGCTCCAATGTGTTACCAGCTCCCTAGATTTCCCATGAATTTCAGTCACACTATTACCAGGCA
GAAGTGTAAATTCAGCAAAATCTCAGCCGTTCATCTTGTAATCCATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis