Browse Element(s) Details


OsAffx.7579.1.S1_at

Description tigr:9640.m01291
TID=OsAffx.7579.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1336010/11Cullin-1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13330NANA12+7434390..7436724Zinc knuckle family protein
LOC_Os12g13340Os.7004.1.S1_at11/1112+7438457..7443509expressed protein
LOC_Os12g13350Os.26063.1.S1_at1/1112+7450551..7455232retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g13360OsAffx.7579.1.S1_at10/1112+7458834..7460279Cullin-1, putative
LOC_Os12g13370NANA12+7465636..7466333hypothetical protein
LOC_Os12g13380Os.134.1.S1_at10/1112+7473839..7477717Adenylate kinase A, putative, expressed
LOC_Os12g13390Os.16710.1.S1_at10/1112+7481725..7487184Aspartyl aminopeptidase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007049biological_processcell cycle
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7579.1.S1_at--1078--4811NONE
GCTCTACATGATGGTGTTGCCGTCA
NONE
OsAffx.7579.1.S1_at--177--2871Chr12:7459731..7459755 (25 bp)
AAGTGAGACGAGGTTCTTCTTCTAC
LOC_Os12g13360
OsAffx.7579.1.S1_at--610--9951Chr12:7459709..7459733 (25 bp)
TACCTCGACCGTTACTACATCTTAC
LOC_Os12g13360
OsAffx.7579.1.S1_at--718--5331Chr12:7459683..7459707 (25 bp)
GAAGTCACTTGTCCCACTTGAACAA
LOC_Os12g13360
OsAffx.7579.1.S1_at--340--2531Chr12:7459655..7459679 (25 bp)
AACTTATGTTCTTTTCGTGATCAGG
LOC_Os12g13360
OsAffx.7579.1.S1_at--783--7431Chr12:7459283..7459307 (25 bp)
GTGTATGTCCAGATTGGGCTTGGCA
LOC_Os12g13360
OsAffx.7579.1.S1_at--1097--3011Chr12:7459232..7459256 (25 bp)
AATGCGTTTCGCGAGAGCACAAGAA
LOC_Os12g13360
OsAffx.7579.1.S1_at--889--2951Chr12:7459166..7459190 (25 bp)
AATGGCGCTGATTCTCCTGAATACA
LOC_Os12g13360
OsAffx.7579.1.S1_at--387--3891Chr12:7459033..7459057 (25 bp)
CTGTGGAATGCTTGCAAGCCGAGCT
LOC_Os12g13360
OsAffx.7579.1.S1_at--548--1671Chr12:7459017..7459041 (25 bp)
AGCCGAGCTGGAACGAGTGTCACAT
LOC_Os12g13360
OsAffx.7579.1.S1_at--522--7451Chr12:7459001..7459025 (25 bp)
GTGTCACATTACTTGCATTCTTCAA
LOC_Os12g13360
Target Sequence 
GCTCTACATGATGGTGTTGCCGTCAATGAGACAGATAAATGGCGAGACTCTATTGAAAGGGTTGGTTGACAGGTGGCGGA
ACCACAAGAAAATTGTCATAAGTGAGACGAGGTTCTTCTTCTACCTCGACCGTTACTACATCTTACGGAAGTCACTTGTC
CCACTTGAACAACTGAACTTATGTTCTTTTCGTGATCAGGTATACAGTGAGCTCAAAGATAAAATAACAAGGACTGTGGT
TGACATGATTAATGATGAGAGGGATGGCAAGGTTATAGACCGTGATCTTTTGAAGGATGTCCTTGATGTGTATGTCCAGA
TTGGGCTTGGCATGGAGTGTTACGAAGTTGATTTTGAAAATGCGTTTCGCGAGAGCACAAGAAATTACTACTCAAACAAA
GCCCAAACTTCGATTTTGGAGTGCAATGGCGCTGATTCTCCTGAATACATGCTTAAGGCTGTGGAATGCTTGCAAGCCGA
GCTGGAACGAGTGTCACATTACTTGCATTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7579.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis