Browse Element(s) Details


Os.16710.1.S1_at

Description gb:AK071207.1
DB_XREF= gi:32981230
TID=Os.16710.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16710 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-013-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088P07, full insert sequence.
FL= gb:AK103925.1 gb:AK071207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1339010/11Aspartyl aminopeptidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13360OsAffx.7579.1.S1_at10/1112+7458834..7460279Cullin-1, putative
LOC_Os12g13370NANA12+7465636..7466333hypothetical protein
LOC_Os12g13380Os.134.1.S1_at10/1112+7473839..7477717Adenylate kinase A, putative, expressed
LOC_Os12g13390Os.16710.1.S1_at10/1112+7481725..7487184Aspartyl aminopeptidase, putative, expressed
LOC_Os12g13400Os.51704.1.S1_at11/1112+7493991..7495614expressed protein
LOC_Os12g13410OsAffx.8992.1.S1_x_at1/1112+7501055..7501531hypothetical protein
LOC_Os12g13420OsAffx.31786.1.S1_at4/1112+7503164..7504716transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0005773cellular_componentvacuole
GO:0042576molecular_functionaspartyl aminopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16710.1.S1_at--1011--3471Chr12:7482183..7482207 (25 bp)
CAGGATTTTGTTGTTCGGAACGACA
LOC_Os12g13390
Os.16710.1.S1_at--1126--10831Chr12:7482154..7482178 (25 bp)
TTGTGGTTCAACCATCGGCCCAATA
LOC_Os12g13390
Os.16710.1.S1_at--782--9451Chr12:7482140..7482164 (25 bp)
TCGGCCCAATACTAGCTAGTGGTGT
LOC_Os12g13390
Os.16710.1.S1_at--680--8071Chr12:7482093..7482117 (25 bp)
GGAGCACCACAATTGTCGATGCACA
LOC_Os12g13390
Os.16710.1.S1_at--885--31Chr12:7481873..7481897 (25 bp)
ATTGGGTTACATTATCTCGTCACAG
LOC_Os12g13390
Os.16710.1.S1_at--1122--10151Chr12:7481861..7481885 (25 bp)
TATCTCGTCACAGGAATCTCATGGA
LOC_Os12g13390
Os.16710.1.S1_at--623--171Chr12:7481816..7481840 (25 bp)
ATTTTTATCTCCTCGTTCCTGGTCA
LOC_Os12g13390
Os.16710.1.S1_at--1105--10631Chr12:7481801..7481825 (25 bp)
TTCCTGGTCAGTTGCCGGGATCTGT
LOC_Os12g13390
Os.16710.1.S1_at--27--491Chr12:7481782..7481806 (25 bp)
ATCTGTGCTGGCCACATCATCTTTT
LOC_Os12g13390
Os.16710.1.S1_at--205--7011Chr12:7481749..7481773 (25 bp)
GTACAGGTCGAAATGTGCTTCTTAG
LOC_Os12g13390
Os.16710.1.S1_at--885--5971Chr12:7481694..7481718 (25 bp)
GAGAAAATCAGAAAGCCTCCTCCCT
NONE
Target Sequence 
CAGGATTTTGTTGTTCGGAACGACATGGGTTGTGGTTCAACCATCGGCCCAATACTAGCTAGTGGTGTTGGTATTCGTAC
TGTGGATATTGGAGCACCACAATTGTCGATGCACAGCATCAGGGAAATGTGTGCTGTCGATGACATCAAGCACTCGTACG
AACACTTCNAAGGCATATTTCGAAGAGTTCACTGAATTGGACAGCAAAGTTAAAGTAGATTGCTAAGATGAAGTAGTGAC
CATACTGGATCAGCCGACTGGTGGTGTTGCTTTGACATATCCTGTACTGTTGCAAAATAAATGAACAATAAATTGGGTTA
CATTATCTCGTCACAGGAATCTCATGGAGAATATATTTTCTGGCTGTNATTTTTATCTCCTCGTTCCTGGTCAGTTGCCG
GGATCTGTGCTGGCCACATCATCTTTTATGGTCTAGTACAGGTCGAAATGTGCTTCTTAGAAGTATAATAAGTTTTCACC
TCAAGTATAGGAGAAAATCAGAAAGCCTCCTCCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis