Browse Element(s) Details


Os.134.1.S1_at

Description gb:D10334.1
DB_XREF= gi:391876
GEN=Adk-a
TID=Os.134.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.134 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for adenylate kinase-a, complete cds.
PROD=adenylate kinase-a
FL= gb:AK059754.1 gb:AK069870.1 gb:D10334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1338010/11Adenylate kinase A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13350Os.26063.1.S1_at1/1112+7450551..7455232retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os12g13360OsAffx.7579.1.S1_at10/1112+7458834..7460279Cullin-1, putative
LOC_Os12g13370NANA12+7465636..7466333hypothetical protein
LOC_Os12g13380Os.134.1.S1_at10/1112+7473839..7477717Adenylate kinase A, putative, expressed
LOC_Os12g13390Os.16710.1.S1_at10/1112+7481725..7487184Aspartyl aminopeptidase, putative, expressed
LOC_Os12g13400Os.51704.1.S1_at11/1112+7493991..7495614expressed protein
LOC_Os12g13410OsAffx.8992.1.S1_x_at1/1112+7501055..7501531hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004017molecular_functionadenylate kinase activity
GO:0019201molecular_functionnucleotide kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.134.1.S1_at--792--2191Chr12:7475960..7475984 (25 bp)
ACAAAATTTGCTCCTCCTAAGACTC
LOC_Os12g13380
Os.134.1.S1_at--787--1371Chr12:7475979..7476000 (22 bp)
AGACTCCTGGACTTGATGATGTTAC
LOC_Os12g13380
Os.134.1.S1_at--84--931Chr12:7476695..7476719 (25 bp)
AGGCTTGAAGCCTTCCACGTACAAA
LOC_Os12g13380
Os.134.1.S1_at--567--2531NONE
AACTAAGCCTGTGATTGACTACTAC
NONE
Os.134.1.S1_at--859--5551Chr12:7477410..7477434 (25 bp)
GAAAGCCCTATCATAAACTGCCAGT
LOC_Os12g13380
Os.134.1.S1_at--758--2551Chr12:7477425..7477449 (25 bp)
AACTGCCAGTTCTTCAGCCTATAAA
LOC_Os12g13380
Os.134.1.S1_at--653--2491Chr12:7477448..7477472 (25 bp)
AACATGACATGTGCCGAAAACCCCT
LOC_Os12g13380
Os.134.1.S1_at--458--10471Chr12:7477494..7477518 (25 bp)
TTAAACTGCTGCCAACACCATGTGG
LOC_Os12g13380
Os.134.1.S1_at--169--9131Chr12:7477533..7477557 (25 bp)
TGCTGTATGGCGCAATTGCTCCATT
LOC_Os12g13380
Os.134.1.S1_at--202--10431Chr12:7477558..7477582 (25 bp)
TTATCACAGTTTTCGCTTCACAGTC
LOC_Os12g13380
Os.134.1.S1_at--289--7691Chr12:7477669..7477693 (25 bp)
GGGTATTCCTTCTGTTCATCTTAAT
LOC_Os12g13380
Target Sequence 
ACAAAATTTGCTCCTCCTAAGACTCCTGGACTTGATGATGTTACTGGAGAACCCTTAATTCAAAGGAAAGATGACACAGC
TGCAGTATTGAAGTCAAGGCTTGAAGCCTTCCACGTACAAACTAAGCCTGTGATTGACTACTACACCAAGAAGGGCATAG
TCGCAAATCTGCATGCCGAAAAACCACCAAAGGAAGTGACTGTTGAGGTCCAGAAAGCCCTATCATAAACTGCCAGTTCT
TCAGCCTATAAACATGACATGTGCCGAAAACCCCTTACACTGGGTTTTCTAGATGTTTAAACTGCTGCCAACACCATGTG
GTTTTCATTTTGATTTGCTGTATGGCGCAATTGCTCCATTTTATCACAGTTTTCGCTTCACAGTCTGAAATTTGTCAAAA
TAATTTGTTGGAATGAGGAAAGAAGTTTTGTATACCAACACCGATATAATTACATCAAGTCAATCTTGACAGGGTATTCC
TTCTGTTCATCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis