Browse Element(s) Details


Os.51704.1.S1_at

Description gb:AK063473.1
DB_XREF= gi:32973491
TID=Os.51704.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51704 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-A10, full insert sequence.
FL= gb:AK063473.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1340011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13380Os.134.1.S1_at10/1112+7473839..7477717Adenylate kinase A, putative, expressed
LOC_Os12g13390Os.16710.1.S1_at10/1112+7481725..7487184Aspartyl aminopeptidase, putative, expressed
LOC_Os12g13400Os.51704.1.S1_at11/1112+7493991..7495614expressed protein
LOC_Os12g13410OsAffx.8992.1.S1_x_at1/1112+7501055..7501531hypothetical protein
LOC_Os12g13420OsAffx.31786.1.S1_at4/1112+7503164..7504716transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13430NANA12+7514255..7515091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13440Os.21284.1.S1_at11/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os12g13440Os.21284.2.S1_x_at10/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51704.1.S1_at--303--3271Chr12:7495297..7495321 (25 bp)
CAACTTGTTCCTGGGCTAATCACAA
LOC_Os12g13400
Os.51704.1.S1_at--88--8311Chr12:7495310..7495334 (25 bp)
GGCTAATCACAAGACGTGACCAGTT
LOC_Os12g13400
Os.51704.1.S1_at--1144--5831Chr12:7495327..7495351 (25 bp)
GACCAGTTGAGGATGCGTTAGTTAT
LOC_Os12g13400
Os.51704.1.S1_at--1069--2791Chr12:7495383..7495407 (25 bp)
AAGATGCAACCATGCGTGCCTACGT
LOC_Os12g13400
Os.51704.1.S1_at--488--4651Chr12:7495396..7495420 (25 bp)
GCGTGCCTACGTGGTTGTTACATTA
LOC_Os12g13400
Os.51704.1.S1_at--203--451Chr12:7495426..7495450 (25 bp)
ATCTAGAGTCTCTGTCTTGGAGTCT
LOC_Os12g13400
Os.51704.1.S1_at--777--9471Chr12:7495436..7495460 (25 bp)
TCTGTCTTGGAGTCTCGTCTCTATA
LOC_Os12g13400
Os.51704.1.S1_at--449--3791Chr12:7495449..7495473 (25 bp)
CTCGTCTCTATAAGTCTGTGAGTGT
LOC_Os12g13400
Os.51704.1.S1_at--1048--6111Chr12:7495468..7495492 (25 bp)
GAGTGTTTGAGATAGTTCGCGATAT
LOC_Os12g13400
Os.51704.1.S1_at--636--3111Chr12:7495560..7495584 (25 bp)
AATATACTATTTATGTCCTTTCAGC
LOC_Os12g13400
Os.51704.1.S1_at--419--10531Chr12:7495579..7495603 (25 bp)
TTCAGCTTTGAATGATAGGCGCAAT
LOC_Os12g13400
Target Sequence 
CAACTTGTTCCTGGGCTAATCACAAGACGTGACCAGTTGAGGATGCGTTAGTTATTAATTTTTTCGGTTGTTAATTTAGA
CTTTTCAAGATGCAACCATGCGTGCCTACGTGGTTGTTACATTAGGTTCATCTAGAGTCTCTGTCTTGGAGTCTCGTCTC
TATAAGTCTGTGAGTGTTTGAGATAGTTCGCGATATATTATTTCTCTCTTTTATTTGTAAGTTGTGCAACTGGATTTGAA
TGTGGGTGTGTATTGTTTGTTTTAATATACTATTTATGTCCTTTCAGCTTTGAATGATAGGCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis