Browse Element(s) Details


OsAffx.31786.1.S1_at

Description tigr:9640.m01738
TID=OsAffx.31786.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1772011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g134204/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17750NANA12+10161115..10164039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17760NANA12+10165091..10170562retrotransposon protein, putative, unclassified
LOC_Os12g17770NANA12+10171257..10171664retrotransposon protein, putative, unclassified
LOC_Os12g17780NANA12+10173855..10175440retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31786.1.S1_at--679--9991Chr12:10149276..10149300 (25 bp)
TAGCAATAAAGTGCCTAAGTCATAT
LOC_Os12g17720
OsAffx.31786.1.S1_at--256--7292Chr12:10149286..10149310 (25 bp)
GTGCCTAAGTCATATAGTGATGCAA
LOC_Os12g17720
OsAffx.31786.1.S1_at--9--2331Chr12:10149322..10149346 (25 bp)
AAAGATCTTGGATTGGATTACACAA
LOC_Os12g17720
OsAffx.31786.1.S1_at--828--7931Chr12:10149336..10149360 (25 bp)
GGATTACACAAAGATCAATGCTTAT
LOC_Os12g17720
OsAffx.31786.1.S1_at--1143--7571Chr12:10149386..10149410 (25 bp)
GGGCTAATGATAAGGCTGATTCTTC
LOC_Os12g17720
OsAffx.31786.1.S1_at--203--6471Chr12:10149394..10149418 (25 bp)
GATAAGGCTGATTCTTCTCCTGTTT
LOC_Os12g17720
OsAffx.31786.1.S1_at--203--4751Chr12:10149400..10149424 (25 bp)
GCTGATTCTTCTCCTGTTTGTGGCA
LOC_Os12g17720
OsAffx.31786.1.S1_at--544--9571Chr12:10149406..10149430 (25 bp)
TCTTCTCCTGTTTGTGGCATTTCAA
LOC_Os12g17720
OsAffx.31786.1.S1_at--662--3872Chr12:10149413..10149437 (25 bp)
CTGTTTGTGGCATTTCAAGATGGAA
LOC_Os12g17720
OsAffx.31786.1.S1_at--953--5312Chr12:10149442..10149466 (25 bp)
GAAGGGCATAATAATGTCTCTAAAT
LOC_Os12g17720
OsAffx.31786.1.S1_at--1132--352Chr12:10149452..10149476 (25 bp)
ATAATGTCTCTAAATCAAGGAGGAG
LOC_Os12g17720
Target Sequence 
TAGCAATAAAGTGCCTAAGTCATATAGTGATGCAAAGAAGACTATGAAAGATCTTGGATTGGATTACACAAAGATCAATG
CTTATTTGAATGATTGCATCTTATATAGAGGGGCTAATGATAAGGCTGATTCTTCTCCTGTTTGTGGCATTTCAAGATGG
AAAAATGAAGGGCATAATAATGTCTCTAAATCAAGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31786.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis