Browse Element(s) Details


OsAffx.31785.2.S1_at

Description tigr:9640.m01737
TID=OsAffx.31785.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1771011/11hypothetical protein
LOC_Os12g176602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17750NANA12+10161115..10164039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17760NANA12+10165091..10170562retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31785.2.S1_at--480--9131Chr12:10144503..10144527 (25 bp)
TGCTGGTATGCACTACAATTGATAA
LOC_Os12g17710
OsAffx.31785.2.S1_at--151--3452Chr12:10144351..10144375 (25 bp)
CAGTTGCGCTCAGGGTTGCAGCCAG
LOC_Os12g17710
OsAffx.31785.2.S1_at--22--2951Chr12:10144325..10144349 (25 bp)
AAGGCTCACTGAGAGACGACTTGTA
LOC_Os12g17710
OsAffx.31785.2.S1_at--700--1391Chr12:10144312..10144336 (25 bp)
AGACGACTTGTACGGCCGATTGGCA
LOC_Os12g17710
OsAffx.31785.2.S1_at--145--7471Chr12:10144225..10144249 (25 bp)
GTGTGCTATAACATGGTCACTGGCA
LOC_Os12g17710
OsAffx.31785.2.S1_at--597--3911Chr12:10144206..10144230 (25 bp)
CTGGCAAGACATATGACACCGGTAA
LOC_Os12g17710
OsAffx.31785.2.S1_at--1079--931Chr12:10144182..10144206 (25 bp)
AGGAATTGGGCAACCGATATAGCAA
LOC_Os12g17710
OsAffx.31785.2.S1_at--431--5171Chr12:10144161..10144185 (25 bp)
GCAAGAATCCCTTCTACGTATACCG
LOC_Os12g17710
OsAffx.31785.2.S1_at--501--1892Chr12:10144146..10144170 (25 bp)
ACGTATACCGTAACAGCATGGCTAA
LOC_Os12g17710
OsAffx.31785.2.S1_at--561--3111Chr12:10144123..10144147 (25 bp)
AATATTCCACATATTGCGGTGCCAG
LOC_Os12g17710
OsAffx.31785.2.S1_at--861--71Chr12:10144111..10144135 (25 bp)
ATTGCGGTGCCAGTTCAAGGTAAAA
LOC_Os12g17710
Target Sequence 
TGCTGGTATGCACTACAATTGATAAGGGTGGACTAATAGTGTATCATCTTGTTAGAGTAAACACCGACTTCAGTTGGGAG
ATCAAGCATGAGAGAAGATGGATTGACATGATGAAGGATAGCATTTCTGCATTTGGGTTCTGCCATTCAATGCAGTTGCG
CTCAGGGTTGCAGCCAGAAAGGCTCACTGAGAGACGACTTGTACGGCCGATTGGCATAGTGGATGGGAGATTTGTTTATA
TTGGGGTGAGACAGGAATGGAAGACGAAGGTTAAGATTGTGTGCTATAACATGGTCACTGGCAAGACATATGACACCGGT
AAGGAATTGGGCAACCGATATAGCAAGAATCCCTTCTACGTATACCGTAACAGCATGGCTAATATTCCACATATTGCGGT
GCCAGTTCAAGGTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31785.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis