Browse Element(s) Details


OsAffx.31785.1.S1_s_at

Description tigr:9640.m01731
TID=OsAffx.31785.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1766011/11hypothetical protein
LOC_Os12g1771011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_x_at7/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.1.S1_x_at6/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.53142.1.S1_at3/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.4.S1_x_at2/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_s_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.23706.1.A1_x_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified
LOC_Os12g17650OsAffx.7622.1.S1_at10/1112+10104467..10107084hypothetical protein
LOC_Os12g17650Os.53180.1.S1_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.23206.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.26961.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31785.1.S1_s_at--1105--3192Chr12:10144805..10144829 (25 bp)
CAAGGCAGTTGGTGCTAGGACCATT
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--36--8092Chr12:10144788..10144812 (25 bp)
GGACCATTGAGGATAACGGGACTAA
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--541--7632Chr12:10144771..10144795 (25 bp)
GGGACTAAGTTTTGCTTTGCCACCT
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--920--8652Chr12:10144700..10144724 (25 bp)
TGTGGACACCAAAATTAACTGCAAC
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--515--7512Chr12:10144653..10144677 (25 bp)
GTGGAATCATGTACTGGGATTACCA
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--832--7312Chr12:10144621..10144645 (25 bp)
GTGCTCTGGTTTGACATTGCCACAG
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--1111--8953Chr12:10144523..10144547 (25 bp)
TGACACCTCTGCCAATGGAATGCTG
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--308--4113Chr12:10144553..10144577 (25 bp)
CGAAGTGAAGGGACCTGTCCACCAT
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--770--7273Chr12:10144537..10144561 (25 bp)
GTCCACCATGATATTGACACCTCTG
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--534--53Chr12:10144525..10144549 (25 bp)
ATTGACACCTCTGCCAATGGAATGC
LOC_Os12g17710
OsAffx.31785.1.S1_s_at--1100--9474Chr12:10177007..10177031 (25 bp)
TCTGCATTTGGGTTCTGCCATTCAA
NONE
Target Sequence 
CAAGGCAGTTGGTGCTAGGACCATTGAGGATAACGGGACTAAGTTTTGCTTTGCCACCTTATCCTCAAATACTAGCTGCT
GGGCCATGTCCAGTACAACCGTTTATGTGGACACCAAAATTAACTGCAACAACAAGAAGGTGGCCTATGGAAGTGGAATC
ATGTACTGGGATTACCAGGAGATTGTGCTCTGGTTTGACATTGCCACAGATATGGCTGGTATCGTGAAGATTCCATGGAT
TCAACTAGGTGTCGAAGTGAAGGGACCTGTCCACCATGATATTGACACCTCTGCCAATGGAATGCTGTTTATAAGATGTG
GTGTCGAAGTGAAGGGACCTGTCCACCATGATATTGACACCTCTGCCAATGGAATGCTTGTGTGTACTACAATTGATAAG
GGTGGACTACCAATGTATCATCTTGTTGGAGTAAACACCGACTTCAATTGGGAGATCAAGCATGACAGAAGATGGATTGA
CATGATGAAGGATAGCATCTCTGCATTTGGGTTCTGCCATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31785.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis