Browse Element(s) Details


OsAffx.7622.1.S1_at

Description tigr:9640.m01730
TID=OsAffx.7622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1765010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17610OsAffx.7621.1.S1_at11/1112+10082760..10083598hypothetical protein
LOC_Os12g17620Os.53142.1.S1_at3/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17620Os.23706.1.A1_x_at1/1112+10085505..10090947retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_x_at7/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.1.S1_x_at6/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.53142.1.S1_at3/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.4.S1_x_at2/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.24831.3.S1_s_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17630Os.23706.1.A1_x_at1/1112+10095667..10098355retrotransposon protein, putative, unclassified
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified
LOC_Os12g17650OsAffx.7622.1.S1_at10/1112+10104467..10107084hypothetical protein
LOC_Os12g17650Os.53180.1.S1_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.23206.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.26961.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7622.1.S1_at--178--6911Chr12:10105704..10105728 (25 bp)
GTAGTGTCTAGGTTGTTAATTTTCG
LOC_Os12g17650
OsAffx.7622.1.S1_at--366--7832Chr12:10105775..10105799 (25 bp)
GGTAACAACCCTCAATATCACTGAA
LOC_Os12g17650
OsAffx.7622.1.S1_at--1146--4031NONE
CGATATCTGGGAGCACTTGGGCCAG
NONE
OsAffx.7622.1.S1_at--1147--3291Chr12:10106666..10106688 (23 bp)
CACTTGGGCCAGGTTTACTTCATTA
LOC_Os12g17650
OsAffx.7622.1.S1_at--700--2051Chr12:10106680..10106704 (25 bp)
ACTTCATTAGTACAATCTGGATCAA
LOC_Os12g17650
OsAffx.7622.1.S1_at--907--7911Chr12:10106698..10106722 (25 bp)
GGATCAAACTTATCTCTACCCGATT
LOC_Os12g17650
OsAffx.7622.1.S1_at--721--9531Chr12:10106712..10106736 (25 bp)
TCTACCCGATTATACCCTATTGCAA
LOC_Os12g17650
OsAffx.7622.1.S1_at--100--10411Chr12:10106721..10106745 (25 bp)
TTATACCCTATTGCAACATTTCCAT
LOC_Os12g17650
OsAffx.7622.1.S1_at--756--6731Chr12:10106799..10106823 (25 bp)
GTTCATGCACAAAAGCCCCGTCGAA
LOC_Os12g17650
OsAffx.7622.1.S1_at--504--3431Chr12:10106891..10106915 (25 bp)
CAGAGGCATTTGAGGCATTTGTGTC
LOC_Os12g17650
OsAffx.7622.1.S1_at--533--10491Chr12:10107020..10107044 (25 bp)
TTCAAGCTCCGGGTTTTTGCGAGGA
LOC_Os12g17650
Target Sequence 
GTAGTGTCTAGGTTGTTAATTTTCGGTGTTTGCTCCGCATCCCACAGTAGGTGTGAGGTGAGTGTAGAGGTGGTAACAAC
CCTCAATATCACTGAAGTCCTCCCTGTTCGGGTGCGCAATAGAGCGATATCTGGGAGCACTTGGGCCAGGTTTACTTCAT
TAGTACAATCTGGATCAAACTTATCTCTACCCGATTATACCCTATTGCAACATTTCCATACGGGTCTGGATAAGGAGTCT
GCACTTTACCTCGACATAACTGCCGGAGGGTCGTTCATGCACAAAAGCCCCGTCGAAGGCAAGGAAATTCTTGATCGCAT
ATCGGAAAATACCTCCTTTGTCGGGCAGTGTGTTGAGCCCCATCCAGAGGCATTTGAGGCATTTGTGTCAGGAAGGGAGG
AACCTTCTTTTGTTGAGCCTGAACTCGAGCCTTCAACATCTCCGGGTCTGACTAAAGAGTCCTTCCTGGAGCCATCGCCG
GATTCCATAGAAATTCAAGCTCCGGGTTTTTGCGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis