Browse Element(s) Details


OsAffx.19720.1.S1_at

Description tigr:9640.m01735
TID=OsAffx.19720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1769011/11hypothetical protein
LOC_Os09g105506/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified
LOC_Os12g17650OsAffx.7622.1.S1_at10/1112+10104467..10107084hypothetical protein
LOC_Os12g17650Os.53180.1.S1_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.23206.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.26961.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19720.1.S1_at--90--5372Chr12:10127607..10127631 (25 bp)
GAAGAACTATCTTTTTCATGAACTG
LOC_Os12g17690
OsAffx.19720.1.S1_at--526--10191Chr12:10127463..10127487 (25 bp)
TATTTAGCTGTTCTCGACCCAAAAA
LOC_Os12g17690
OsAffx.19720.1.S1_at--403--432Chr12:10127266..10127290 (25 bp)
ATCTTGATATCATTACACGGCGGCA
LOC_Os12g17690
OsAffx.19720.1.S1_at--683--112Chr12:10127255..10127279 (25 bp)
ATTACACGGCGGCAGGACTTACCTA
LOC_Os12g17690
OsAffx.19720.1.S1_at--834--952Chr12:10127242..10127266 (25 bp)
AGGACTTACCTAGCCATGAATGGAT
LOC_Os12g17690
OsAffx.19720.1.S1_at--463--2291Chr12:10127211..10127235 (25 bp)
AAATGTCGTGACATGGCCGATCATA
LOC_Os12g17690
OsAffx.19720.1.S1_at--955--8411Chr12:10127197..10127221 (25 bp)
GGCCGATCATAGAACAATTACAAGT
LOC_Os12g17690
OsAffx.19720.1.S1_at--931--1312Chr12:10127051..10127184 (25 bp)
AGATGGTTCTTCTTGTGGGCTCTTC
LOC_Os12g17690
OsAffx.19720.1.S1_at--944--3652Chr12:10127043..10127067 (25 bp)
CTTCTTGTGGGCTCTTCATGCTCAA
LOC_Os12g17690
OsAffx.19720.1.S1_at--49--9791Chr12:10126994..10127018 (25 bp)
TAAATTTTCTTATCCTGTTACACAG
LOC_Os12g17690
OsAffx.19720.1.S1_at--1125--9671Chr12:10126492..10126516 (25 bp)
TCACGGCCGCGCACCATAAAAATAA
LOC_Os12g17690
Target Sequence 
GAAGAACTATCTTTTTCATGAACTGAAGAAATATTCATTGGTATTTAGCTGTTCTCGACCCAAAAAAAAAGTGATACATG
TACTTGATTCTCTCTGTGAGGACTTCGATCGTGTTGACCTCCATATAGCGATACAAGGAGTACAAAAACATCTTGATATC
ATTACACGGCGGCAGGACTTACCTAGCCATGAATGGATAGATCTAAATGTCGTGACATGGCCGATCATAGAACAATTACA
AGTCAAAATTCAACTAGATGGTTCTTCTTGTGGGCTCTTCATGCTCAAATTTATGGAGTTTTTTACTGGAGATAAATTTT
CTTATCCTGTTACACAGAAAGATATTGAACTTTTTAGGTACAAGTTAGCCGGTATATTACTGTGTTGGAAAACAAATATG
GCGGCCGAGGTTTCCGATGTTGAACAAGTCGAAGATACAGACAATGAAGATGATGTTGTGATAGTGGGCAGTCGTCAAAG
AGAAAGATGGGACATGAAGGAATCTAAAGAATATATGGGTGCAAAGTTCACGGCCGCGCACCATAAAAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19720.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis