Browse Element(s) Details


Os.51642.1.S1_x_at

Description gb:AK063250.1
DB_XREF= gi:32973268
TID=Os.51642.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-112-H03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-H03, full insert sequence.
FL= gb:AK063250.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1770011/11expressed protein
LOC_Os05g276803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17750NANA12+10161115..10164039retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51642.1.S1_x_at--741--5371Chr12:10137359..10137383 (25 bp)
GAAGACAGACTAGACCAGATGGGAT
LOC_Os12g17700
Os.51642.1.S1_x_at--1013--6251Chr12:10137376..10137399 (24 bp)
GATGGGATCTGCAGCTGGAACACGT
LOC_Os12g17700
Os.51642.1.S1_x_at--854--4711Chr12:10137389..10137563 (25 bp)
GCTGGAACACGTAGGTTGTGCACTT
LOC_Os12g17700
Os.51642.1.S1_x_at--709--2172Chr12:10137549..10137569 (21 bp)
ACACGTAGGTTGTGCACTTCTGCAA
LOC_Os12g17700
Os.51642.1.S1_x_at--212--7352Chr12:10137556..10137580 (25 bp)
GTGCACTTCTGCAAACAATGCTGCA
LOC_Os12g17700
Os.51642.1.S1_x_at--103--10613Chr12:10137562..10137586 (25 bp)
TTCTGCAAACAATGCTGCAGTGTCC
LOC_Os12g17700
Os.51642.1.S1_x_at--634--2851Chr12:10137929..10137953 (25 bp)
AAGTCGCAACTGTGTGCAGCGGCTC
LOC_Os12g17700
Os.51642.1.S1_x_at--889--4111Chr12:10137933..10137957 (25 bp)
CGCAACTGTGTGCAGCGGCTCATCG
LOC_Os12g17700
Os.51642.1.S1_x_at--198--3831Chr12:10138018..10138042 (25 bp)
CTGCCTGGCTGCCTCATAGCAGTGA
LOC_Os12g17700
Os.51642.1.S1_x_at--189--8491Chr12:10138023..10138047 (25 bp)
TGGCTGCCTCATAGCAGTGACAAGC
LOC_Os12g17700
Os.51642.1.S1_x_at--828--10192Chr12:10138197..10138221 (25 bp)
TATATACCAGCAGCGATCTCGCTTG
LOC_Os12g17700
Target Sequence 
GAAGACAGACTAGACCAGATGGGATCTGCAGCTGGAACACGTAGGTTGTGCACTTCTGCAAACAATGCTGCAGTGTCCCT
TCCTCCGNGGNGNGGAANGTCACGATCGATCGCGTNCGGCGGGCGGCAGCGACGGACTGCAGGCCCNGCGANCGGCACGG
GCCGCGCCTCTCANGTCNNCGTTGATGGGGATGGAGGNCTTCGACACAGCTGCAGCATCCCCTTCGTCCATGTTCGGCCG
GNCGGCACTGTTCCCGTCCTCGGGGAAGCTCATGGAGTCATATGGTGTCGCAAGTCGCAACTGTGTGCAGCGGCTCATCG
NCGTCGACCTTGAGACTAACATTTGGCCTTCACTGAACTTCGCGCCGTTGTCGATACCTCCTGCCTGGCTGCCTCATAGC
AGTGACAAGCAAGACATCGGCAGGAGTCAAAATGCTAGCAATAGCTGCCGTTTAGTTTTTTTNATGCACTATANGGATGG
ACCAACAGCTGCCCTGTAAATTTTTTACTACTAGTAGCACATTTATGTTGTGATAAAAAATTACTGTACCTTTTTTTTAC
TATATACCAGCAGCGATCTCGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51642.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis