Browse Element(s) Details


OsAffx.19720.2.S1_s_at

Description tigr:9637.m00815
TID=OsAffx.19720.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1769011/11hypothetical protein
LOC_Os09g1055011/11hypothetical protein
LOC_Os02g560101/11UDP-rhamnose:rhamnosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17640NANA12+10100797..10103007retrotransposon protein, putative, unclassified
LOC_Os12g17650OsAffx.7622.1.S1_at10/1112+10104467..10107084hypothetical protein
LOC_Os12g17650Os.53180.1.S1_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.23206.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17650OsAffx.26961.1.S1_x_at1/1112+10104467..10107084hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19720.2.S1_s_at--1127--592Chr12:10128155..10128179 (25 bp)
ATGCCCAATAATGGCGTACCATCGA
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--826--9692Chr12:10128115..10128139 (25 bp)
TAATTGGCCAGACTTACGACTACCT
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--1143--9792Chr12:10127982..10128006 (25 bp)
TAACCAACCAGGATGTTACTGCTCA
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--807--6774Chr02:34271368..34271438 (25 bp)
GTTACTGCTCAAGACATTATTCTGG
LOC_Os02g56010
OsAffx.19720.2.S1_s_at--4--5692Chr12:10127956..10127980 (25 bp)
GACATTATTCTGGTATCATCTGAAA
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--727--5492Chr12:10127918..10127942 (25 bp)
GAACATGGGAGGTTTTTCTGTCAAA
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--822--2412Chr12:10127895..10127919 (25 bp)
AAAAACATCACCTATCGTGCCTTCT
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--901--4292Chr12:10127885..10127909 (25 bp)
CCTATCGTGCCTTCTCACTAAAGAT
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--822--3512Chr12:10127428..10127452 (25 bp)
CATGTACTTGATTCTCTCTGTGAGG
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--934--3772Chr12:10127413..10127437 (25 bp)
CTCTGTGAGGACTTCGATCGTGTTG
LOC_Os12g17690
OsAffx.19720.2.S1_s_at--418--6392Chr12:10127399..10127422 (24 bp)
GATCGTGTTGACCTCCATATAGCGA
LOC_Os12g17690
Target Sequence 
ATGCCCAATAATGGCGTACCATCGAACTTGATACGATCTATAATTGGCCAGACTTACGACTACCTCCCTCAAGATTATGT
ATTAACCAACCAGGATGTTACTGCTCAAGACATTATTCTGGTATCATCTGAAAATGAGACGCTGGTGAACATGGGAGGTT
TTTCTGTCAAAAAACATCACCTATCGTGCCTTCTCACTAAAGATGAATGGGTGAACGACGACATTTTTCTACCAATAAAT
AGAGGAAATATTCATTGGTATTTAGCTATTCTCAACCCCCAAAAAAAAGTGATACATGTACTTGATTCTCTCTGTGAGGA
CTTCGATCGTGTTGACCTCCATATAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19720.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis