Browse Element(s) Details


OsAffx.7623.1.S1_at

Description tigr:9640.m01736
TID=OsAffx.7623.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g177004/11expressed protein
LOC_Os05g276803/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17660OsAffx.31785.1.S1_s_at11/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.1.S1_at5/1112+10112963..10114536hypothetical protein
LOC_Os12g17660OsAffx.31785.2.S1_at2/1112+10112963..10114536hypothetical protein
LOC_Os12g17670NANA12+10117386..10118755hypothetical protein
LOC_Os12g17680NANA12+10122582..10123528hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_s_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.1.S1_at11/1112+10126449..10133761hypothetical protein
LOC_Os12g17690Os.53181.1.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17690OsAffx.19720.2.S1_at4/1112+10126449..10133761hypothetical protein
LOC_Os12g17700Os.51642.1.S1_x_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700Os.51642.1.S1_at11/1112+10137225..10138227expressed protein
LOC_Os12g17700OsAffx.7623.1.S1_at4/1112+10137225..10138227expressed protein
LOC_Os12g17710OsAffx.31785.2.S1_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17710OsAffx.31785.1.S1_s_at11/1112+10144055..10145398hypothetical protein
LOC_Os12g17720OsAffx.31786.1.S1_at11/1112+10149235..10149653transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17730NANA12+10151865..10152413retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17740NANA12+10154709..10160798retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17750NANA12+10161115..10164039retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7623.1.S1_at--693--4313Chr12:10137729..10137753 (25 bp)
CCTTCGTCCATGTATGATGGCGCTA
LOC_Os12g17700
OsAffx.7623.1.S1_at--323--6271Chr12:10137754..10137778 (25 bp)
GATGTAGCTCCAATTGGTTCCTAGG
LOC_Os12g17700
OsAffx.7623.1.S1_at--969--8552Chr12:10137768..10137792 (25 bp)
TGGTTCCTAGGCGTTGAGTTTCAAA
LOC_Os12g17700
OsAffx.7623.1.S1_at--1026--4712Chr12:10137828..10137852 (25 bp)
GCTGGATTTCTTCCGTGTGATTCAT
LOC_Os12g17700
OsAffx.7623.1.S1_at--1083--8671Chr05:16049138..16049512 (25 bp)
TGTGATTCATTACCAGCGATCTCGC
NONE
OsAffx.7623.1.S1_at--71--8872Chr12:10138220..10138244 (25 bp)
TGATGCACACATTTTCGTCTACGTC
NONE
OsAffx.7623.1.S1_at--532--7152Chr12:10138236..10138260 (25 bp)
GTCTACGTCGTTGCCATGATTGCAC
NONE
OsAffx.7623.1.S1_at--388--9651Chr12:10140950..10140974 (25 bp)
TCAGTGCTCAGGACATCGGCGTGGA
NONE
OsAffx.7623.1.S1_at--594--8271Chr12:10141552..10141576 (25 bp)
GGCAGGACTCCATTAATCGATTCGA
NONE
OsAffx.7623.1.S1_at--930--6571Chr12:10141570..10141594 (25 bp)
GATTCGAATATCTTGCCACGATTGG
NONE
OsAffx.7623.1.S1_at--409--9371Chr12:10141644..10141668 (25 bp)
TCGACGATGCCCTTAGAGTTCATGA
NONE
Target Sequence 
CCTTCGTCCATGTATGATGGCGCTAGATGTAGCTCCAATTGGTTCCTAGGCGTTGAGTTTCAAATTTGTACTGATGCAGT
GATGCTTATTCCTGGAATTGCTGGATTTCTTCCGTGTGATTCATTACCAGCGATCTCGCTTGATGCACACATTTTCGTCT
ACGTCGTTGCCATGATTGCACGTGTGTGCACGGCGAGGACGGGAGGTGGGCGCGGGCAGTCGGCGAGGACAGAGCAGGGA
CCGGTGGTCGGCGTGGGCGGCGCAGACGGCGGCGCGGACGTCAGTGCTCAGGACATCGGCGTGGAGGCGGAGGCGGCGGA
GGAGCATGGCGGCGGTGAGGAAATCAACCTCACACTCGTCAACAGGCAGGACTCCATTAATCGATTCGAATATCTTGCCA
CGATTGGGATCATTAAATTCACCTTGTTGGTCAAGAAGAAGTTGAAGGTGATGACCTCGACGATGCCCTTAGAGTTCATG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7623.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis