Browse Element(s) Details


OsAffx.8992.1.S1_x_at

Description gb:NM_193422.1
DB_XREF= gi:34913927
GEN=OSJNBa0066C06.16
TID=OsAffx.8992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0066C06.16 (OSJNBa0066C06.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g134101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13380Os.134.1.S1_at10/1112+7473839..7477717Adenylate kinase A, putative, expressed
LOC_Os12g13390Os.16710.1.S1_at10/1112+7481725..7487184Aspartyl aminopeptidase, putative, expressed
LOC_Os12g13400Os.51704.1.S1_at11/1112+7493991..7495614expressed protein
LOC_Os12g13410OsAffx.8992.1.S1_x_at1/1112+7501055..7501531hypothetical protein
LOC_Os12g13420OsAffx.31786.1.S1_at4/1112+7503164..7504716transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13430NANA12+7514255..7515091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13440Os.21284.1.S1_at11/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os12g13440Os.21284.2.S1_x_at10/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8992.1.S1_x_at--566--4493Chr01:21102616..21102640 (25 bp)
GCCGGGCTTCCAGTGGCCAAAGTGC
NONE
OsAffx.8992.1.S1_x_at--1018--9214Chr10:7646071..7646095 (25 bp)
TCCAGTGGCCAAAGTGCGGCGACGT
NONE
OsAffx.8992.1.S1_x_at--819--4093Chr01:21102643..21102667 (25 bp)
CGACGTCGGCGGCATATTGTGTTCC
NONE
OsAffx.8992.1.S1_x_at--1107--8333Chr01:21102650..21102674 (25 bp)
GGCGGCATATTGTGTTCCCGGTCGA
NONE
OsAffx.8992.1.S1_x_at--443--4934Chr10:7646101..7646125 (25 bp)
GCATATTGTGTTCCCGGTCGACGCG
NONE
OsAffx.8992.1.S1_x_at--302--5992Chr01:21103026..21103050 (25 bp)
GAGACATGGCTATGGCGACGGCGAC
NONE
OsAffx.8992.1.S1_x_at--1070--1413Chr12:7501137..7501263 (25 bp)
AGAAAGAGAACGACGGCGCCGGCTT
LOC_Os12g13410
OsAffx.8992.1.S1_x_at--751--4912Chr01:21103075..21103099 (25 bp)
GCTTCGTTCTCCCATTGGTCGGCGA
NONE
OsAffx.8992.1.S1_x_at--246--9392Chr01:21103078..21103102 (25 bp)
TCGTTCTCCCATTGGTCGGCGACGG
NONE
OsAffx.8992.1.S1_x_at--512--4576Chr12:19297826..19297850 (25 bp)
GCGCGTGCACGTGGCGGCCGCAGAG
NONE
OsAffx.8992.1.S1_x_at--1105--1034Chr10:7656663..7656687 (25 bp)
AGGTGCACGGCACGGCGTCGGCTTG
NONE
Target Sequence 
GCCGGGCTTCCAGTGGCCAAAGTGCGGCGACGTCGGCGGCATATTGTGTTCCCGGTCGACGCGCACTCGGGGAGGCCGCG
GAGGTCGGTTTCCAAAGTCGGTTTGGAGGGGAGAAGGGAGACATGGCTATGGCGACGGCGACGTGAGAAAGAGAACGACG
GCGCCGGCTTCGTTCTCCCATTGGTCGGCGACGGCGGCGCGTGCACGTGGCGGCCGCAGAGGAGTTAGGCGGCGAGGAAA
GAGGTGCACGGCACGGCGTCGGCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8992.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis