Browse Element(s) Details


Os.7198.1.S1_at

Description gb:AK120315.1
DB_XREF= gi:37989938
TID=Os.7198.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013055L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055L24, full insert sequence.
FL= gb:AK120315.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4968011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein
LOC_Os04g49670OsAffx.4131.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49670Os.8681.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49680Os.7198.1.S1_at11/114+29405298..29406030expressed protein
LOC_Os04g49690Os.5431.1.S1_at11/114+29417103..29418943protein kinase family protein, putative, expressed
LOC_Os04g49700Os.51709.2.S1_at11/114+29421872..29423292Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7198.1.S1_at--433--6651Chr04:29405632..29405656 (25 bp)
GTTGATGAGCTGCATACCTTAGGTA
LOC_Os04g49680
Os.7198.1.S1_at--159--1391Chr04:29405608..29405632 (25 bp)
AGACGAGCGTGAGCTTGCAAGATGT
LOC_Os04g49680
Os.7198.1.S1_at--1141--471Chr04:29405498..29405522 (25 bp)
ATCTGAGGAAGGGACTCCGAGATTC
LOC_Os04g49680
Os.7198.1.S1_at--578--3131Chr04:29405456..29405480 (25 bp)
AATTTAGGCCATGTGTGCTTCTCTT
LOC_Os04g49680
Os.7198.1.S1_at--468--10251Chr04:29405406..29405430 (25 bp)
TTTGTATGAGGAGCTGATCTGAGTT
LOC_Os04g49680
Os.7198.1.S1_at--956--1231Chr04:29405385..29405409 (25 bp)
AGTTGGTGTGAAGAGCAATTCCGCT
LOC_Os04g49680
Os.7198.1.S1_at--1108--5191Chr04:29405371..29405395 (25 bp)
GCAATTCCGCTGTAAATATTCGAGG
LOC_Os04g49680
Os.7198.1.S1_at--556--10211Chr04:29405355..29405379 (25 bp)
TATTCGAGGCATTCCGAGAAGTTCT
LOC_Os04g49680
Os.7198.1.S1_at--712--4211Chr04:29405342..29405366 (25 bp)
CCGAGAAGTTCTATTGAGCCATAAT
LOC_Os04g49680
Os.7198.1.S1_at--358--5871Chr04:29405327..29405351 (25 bp)
GAGCCATAATTTTTTGAGCAGAATC
LOC_Os04g49680
Os.7198.1.S1_at--510--5251Chr04:29405307..29405331 (25 bp)
GAATCATATTTGTGTCTACTCTTTT
LOC_Os04g49680
Target Sequence 
GTTGATGAGCTGCATACCTTAGGTAGACGAGCGTGAGCTTGCAAGATGTGATGAAGGAGTTGTTNTTGCTCATGTCTGGC
CGGCCGCTGTGCCGATGGATGGATCTGGTCGGAGTCGAAGCAGAGAAAGGACGGATCTGAGGAAGGGACTCCGAGATTCN
CCAGGCNCCATGGTTTAATTTAGGCCATGTGTGCTTCTCTTTTTTTNNNNNNNTNNGTNNGCTCCTTTTGTATGAGGAGC
TGATCTGAGTTGGTGTGAAGAGCAATTCCGCTGTAAATATTCGAGGCATTCCGAGAAGTTCTATTGAGCCATAATTTTTT
GAGCAGAATCATATTTGTGTCTACTCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis