Browse Element(s) Details


OsAffx.4131.1.S1_at

Description tigr:9632.m04823
TID=OsAffx.4131.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4967011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49640OsAffx.19542.3.S1_x_at3/114+29377372..29381311retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g49650Os.12323.1.S1_a_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.2.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49650Os.12323.1.S1_at11/114+29386589..29388086expressed protein
LOC_Os04g49660OsAffx.26384.4.S1_at3/114+29391364..29392042expressed protein
LOC_Os04g49670OsAffx.4131.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49670Os.8681.1.S1_at11/114+29400272..29402411hypothetical protein
LOC_Os04g49680Os.7198.1.S1_at11/114+29405298..29406030expressed protein
LOC_Os04g49690Os.5431.1.S1_at11/114+29417103..29418943protein kinase family protein, putative, expressed
LOC_Os04g49700Os.51709.2.S1_at11/114+29421872..29423292Zinc finger, C3HC4 type family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4131.1.S1_at--1098--2671Chr04:29400463..29400487 (25 bp)
AAGCGTCTCCGCATCACTAGGTGTG
LOC_Os04g49670
OsAffx.4131.1.S1_at--26--391Chr04:29400451..29400475 (25 bp)
ATCACTAGGTGTGTGCTTCTGTACA
LOC_Os04g49670
OsAffx.4131.1.S1_at--706--8691Chr04:29400440..29400464 (25 bp)
TGTGCTTCTGTACATGGCGTGCAGC
LOC_Os04g49670
OsAffx.4131.1.S1_at--852--9031Chr04:29400421..29400445 (25 bp)
TGCAGCACCAACATCTGCCATGATT
LOC_Os04g49670
OsAffx.4131.1.S1_at--1015--4331Chr04:29400404..29400428 (25 bp)
CCATGATTCCCGTCGTTTGGAGGAG
LOC_Os04g49670
OsAffx.4131.1.S1_at--540--8071Chr04:29400380..29400404 (25 bp)
GGAGCTTAGCTCCACGATTGGCCTA
LOC_Os04g49670
OsAffx.4131.1.S1_at--704--6611Chr04:29400365..29400389 (25 bp)
GATTGGCCTATTCTGGAATCTGGAC
LOC_Os04g49670
OsAffx.4131.1.S1_at--661--5251Chr04:29400350..29400374 (25 bp)
GAATCTGGACACACCGTTGCAGTGT
LOC_Os04g49670
OsAffx.4131.1.S1_at--720--6651Chr04:29400335..29400359 (25 bp)
GTTGCAGTGTGCGTGCCTAACCATG
LOC_Os04g49670
OsAffx.4131.1.S1_at--101--9811Chr04:29400318..29400342 (25 bp)
TAACCATGTGGTGCTGCCGTCTGAT
LOC_Os04g49670
OsAffx.4131.1.S1_at--1153--4231Chr04:29400302..29400326 (25 bp)
CCGTCTGATTCGTGGGCAAAAGGCT
LOC_Os04g49670
Target Sequence 
AAGCGTCTCCGCATCACTAGGTGTGTGCTTCTGTACATGGCGTGCAGCACCAACATCTGCCATGATTCCCGTCGTTTGGA
GGAGGAGCTTAGCTCCACGATTGGCCTATTCTGGAATCTGGACACACCGTTGCAGTGTGCGTGCCTAACCATGTGGTGCT
GCCGTCTGATTCGTGGGCAAAAGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis