Browse Element(s) Details


Os.7505.2.S1_at

Description gb:AK064944.1
DB_XREF= gi:32974962
TID=Os.7505.2
CNT=23
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7505 (NCBI UniGene Cluster)
UG_TITLE=CLA1 transketolase-like protein (CLA1) mRNA, nuclear gene encoding putative chloroplast protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P14, full insert sequence.
FL= gb:AK104851.1 gb:AK064944.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3384011/111-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33810Os.19407.1.S1_at11/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.45957.3.S1_x_at3/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33810Os.49445.1.S1_at1/115+19840016..19849297SBP domain containing protein, expressed
LOC_Os05g33820Os.27565.1.S1_a_at11/115+19851468..19855093L1 Lipase, putative, expressed
LOC_Os05g33830NANA5+19870231..19870920Zinc finger, C3HC4 type family protein
LOC_Os05g33840Os.7505.2.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840Os.7505.1.S1_at11/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33840OsAffx.3991.1.S1_at1/115+19873999..198799541-deoxy-D-xylulose-5-phosphate synthase, chloroplast, putative, expressed
LOC_Os05g33850Os.16982.1.S1_at11/115+19885722..19890373UBA/TS-N domain containing protein, expressed
LOC_Os05g33860NANA5+19894208..19895259hypothetical protein
LOC_Os05g33870OsAffx.4510.1.S1_at11/115+19898356..19899306Ran GTPase activating protein, putative
LOC_Os05g33880Os.11188.1.S1_at10/115+19900616..19904541Cystatin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016114biological_processterpenoid biosynthesis
GO:0008661molecular_function1-deoxy-D-xylulose-5-phosphate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7505.2.S1_at--547--6151Chr05:19874687..19874711 (25 bp)
GAGGTTCTGCAAGCCGCTGGACCAA
LOC_Os05g33840
Os.7505.2.S1_at--957--9671Chr05:19874622..19874646 (25 bp)
TCACCGTCGAGGAAGGCTCCATCGG
LOC_Os05g33840
Os.7505.2.S1_at--724--9251Chr05:19874558..19874577 (20 bp)
TCCTCGACGGCAAACTCAAGTGGCG
LOC_Os05g33840
Os.7505.2.S1_at--1153--8591Chr05:19874400..19874424 (25 bp)
TGGTGCTACCCGACAGGTACATCGA
LOC_Os05g33840
Os.7505.2.S1_at--688--5651Chr05:19874389..19874413 (25 bp)
GACAGGTACATCGACCACGGGTCAC
LOC_Os05g33840
Os.7505.2.S1_at--265--691Chr05:19874269..19874293 (25 bp)
ATGACGGTGCCCAACGCGTAGCAGA
LOC_Os05g33840
Os.7505.2.S1_at--883--611Chr05:19874245..19874269 (25 bp)
ATGCGTGGCGCCTCTGGTAGAGACA
LOC_Os05g33840
Os.7505.2.S1_at--607--3151Chr05:19874194..19874218 (25 bp)
AATTGTATATTAGTCGGCGTCGGGA
LOC_Os05g33840
Os.7505.2.S1_at--1086--10391Chr05:19874128..19874152 (25 bp)
TTTTGCTCTTCAGTTGTTCGTGGAC
LOC_Os05g33840
Os.7505.2.S1_at--970--5991Chr05:19874102..19874126 (25 bp)
GAGACCCGGCTGCTCGATGTTCGAT
LOC_Os05g33840
Os.7505.2.S1_at--250--6291Chr05:19874087..19874111 (25 bp)
GATGTTCGATCGCTTGTATATCTAA
LOC_Os05g33840
Target Sequence 
GAGGTTCTGCAAGCCGCTGGACCAANCGCTCATCAGGAGGCTGGCCAGCTCCCACGAGGTGCTCCTCACCGTCGAGGAAG
GCTCCATCGGCGGGTTCGGCTCCCACGTCGCGCAGTTCATGGCCCTCGACGGCCTCCTCGACGGCAAACTCAAGTGGCGG
CCGCTGGTGCTACCCGACAGGTACATCGACCACGGGTCACCGGCGGATCAGCTGGCGGAGGCAGGGCTGACGCCGTCGCA
CATCGCGGCGACGGTGTTCAACGTGCTGGGCCAGGCGAGGGAGGCGCTCGCCATCATGACGGTGCCCAACGCGTAGCAGA
TGCGTGGCGCCTCTGGTAGAGACAATGCTTTGTACATGTAGAGATCAGTGAATTGTATATTAGTCGGCGTCGGGATAAAT
ATTGATTAGTGATGCTGAGGGGAACAGTTACAGNTTTTTTGCTCTTCAGTTGTTCGTGGACGGAGACCCGGCTGCTCGAT
GTTCGATCGCTTGTATATCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7505.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis