Browse Element(s) Details


Os.7854.1.S1_at

Description gb:AK069893.1
DB_XREF= gi:32979917
TID=Os.7854.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.7854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039F13, full insert sequence.
FL= gb:AK100379.1 gb:AK069893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4970011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49660OsAffx.5156.1.S1_at11/116+30050930..30052339Transferase family protein, expressed
LOC_Os06g49670Os.51725.1.S1_at11/116+30058825..30062001pentatricopeptide, putative, expressed
LOC_Os06g49680Os.53567.1.S1_at11/116+30063112..30064315expressed protein
LOC_Os06g49680OsAffx.17155.1.S1_x_at1/116+30063112..30064315expressed protein
LOC_Os06g49690Os.51615.1.S1_at10/116+30065047..30065845expressed protein
LOC_Os06g49700Os.7854.1.S1_at11/116+30068673..30072758expressed protein
LOC_Os06g49700Os.7854.1.S2_at11/116+30068673..30072758expressed protein
LOC_Os06g49710Os.55761.1.S1_at11/116+30073602..30074500expressed protein
LOC_Os06g49720NANA6+30078060..30080578retrotransposon protein, putative, unclassified
LOC_Os06g49730NANA6+30083830..30084117hypothetical protein
LOC_Os06g49740Os.13714.1.S1_at11/116+30086164..30088574expressed protein
LOC_Os06g49750NANA6+30091168..30092515expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7854.1.S1_at--672--8551Chr06:30070496..30070520 (25 bp)
TGGATCCGAGGTGCCCAAATGCGTC
LOC_Os06g49700
Os.7854.1.S1_at--86--2291Chr06:30070512..30070536 (25 bp)
AAATGCGTCCAACCCATTCCATATA
LOC_Os06g49700
Os.7854.1.S1_at--941--3591Chr06:30070526..30070550 (25 bp)
CATTCCATATATGCGCCCAATACTG
LOC_Os06g49700
Os.7854.1.S1_at--349--4571Chr06:30070538..30070562 (25 bp)
GCGCCCAATACTGCTTTGATCATTT
LOC_Os06g49700
Os.7854.1.S1_at--780--551Chr06:30070743..30070767 (25 bp)
ATCCTGATTGTGTGAATGCGTCCAA
LOC_Os06g49700
Os.7854.1.S1_at--792--7251Chr06:30070762..30070786 (25 bp)
GTCCAATCCCTACCACAAGTGTGGG
LOC_Os06g49700
Os.7854.1.S1_at--92--8351Chr06:30071545..30071569 (25 bp)
GGCTGGCGATACAAGGTTTCCTCTC
LOC_Os06g49700
Os.7854.1.S1_at--349--2911Chr06:30071557..30071581 (25 bp)
AAGGTTTCCTCTCCAGATGATGATG
LOC_Os06g49700
Os.7854.1.S1_at--964--531Chr06:30071598..30071622 (25 bp)
ATCCCGACAATAGTCCTGTAGGTTT
LOC_Os06g49700
Os.7854.1.S1_at--585--5411Chr06:30071628..30071652 (25 bp)
GAAGCTGTGTTTCCATCGGCTCCGC
LOC_Os06g49700
Os.7854.1.S1_at--955--8311Chr06:30071645..30071669 (25 bp)
GGCTCCGCTTTTTATTGTGGCTGCA
LOC_Os06g49700
Target Sequence 
TGGATCCGAGGTGCCCAAATGCGTCCAACCCATTCCATATATGCGCCCAATACTGCTTTGATCATTTGAANGAAACGGGT
CAGAAAGATACAAGCAAACCAGACTCAAGGAAGGGCAAAGCTGTTGTGAAAGCAGAGCAAACAGGAGAAATCAATCCTGA
TTGTGTGAATGCGTCCAATCCCTACCACAAGTGTGGGGAACATTGTAAGAGAAAGGGTGACAGGTAGATAAGGCTGGCGA
TACAAGGTTTCCTCTCCAGATGATGATGGTGAAAAAAAAAGTATATCCCGACAATAGTCCTGTAGGTTTCAATAGAAGCT
GTGTTTCCATCGGCTCCGCTTTTTATTGTGGCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis