Browse Element(s) Details


Os.7854.1.S2_at

Description gb:AK100379.1
DB_XREF= gi:32985588
TID=Os.7854.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023085C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023085C01, full insert sequence.
FL= gb:AK100379.1 gb:AK069893.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4970011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g49660OsAffx.5156.1.S1_at11/116+30050930..30052339Transferase family protein, expressed
LOC_Os06g49670Os.51725.1.S1_at11/116+30058825..30062001pentatricopeptide, putative, expressed
LOC_Os06g49680Os.53567.1.S1_at11/116+30063112..30064315expressed protein
LOC_Os06g49680OsAffx.17155.1.S1_x_at1/116+30063112..30064315expressed protein
LOC_Os06g49690Os.51615.1.S1_at10/116+30065047..30065845expressed protein
LOC_Os06g49700Os.7854.1.S1_at11/116+30068673..30072758expressed protein
LOC_Os06g49700Os.7854.1.S2_at11/116+30068673..30072758expressed protein
LOC_Os06g49710Os.55761.1.S1_at11/116+30073602..30074500expressed protein
LOC_Os06g49720NANA6+30078060..30080578retrotransposon protein, putative, unclassified
LOC_Os06g49730NANA6+30083830..30084117hypothetical protein
LOC_Os06g49740Os.13714.1.S1_at11/116+30086164..30088574expressed protein
LOC_Os06g49750NANA6+30091168..30092515expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7854.1.S2_at--728--7011Chr06:30072173..30072197 (25 bp)
GTACTACTGTACACGTCATGTTACT
LOC_Os06g49700
Os.7854.1.S2_at--145--7591Chr06:30072219..30072243 (25 bp)
GGGCTTGGAATTTTCAGACTCGTCA
LOC_Os06g49700
Os.7854.1.S2_at--298--8911Chr06:30072255..30072279 (25 bp)
TGAGACGTCCAATTCGTGCCTGAAA
LOC_Os06g49700
Os.7854.1.S2_at--1099--7251Chr06:30072270..30072294 (25 bp)
GTGCCTGAAAATGTCTTTTGACCTG
LOC_Os06g49700
Os.7854.1.S2_at--768--10371Chr06:30072309..30072333 (25 bp)
TTTTCCAGTGTTTGCAGCATAGCTG
LOC_Os06g49700
Os.7854.1.S2_at--47--7731Chr06:30072369..30072393 (25 bp)
GGGTGGTTGCACGTTCTGATTATAT
LOC_Os06g49700
Os.7854.1.S2_at--905--171Chr06:30072392..30072416 (25 bp)
ATTTATGGTTCACACGTAGGCGACA
LOC_Os06g49700
Os.7854.1.S2_at--643--7231Chr06:30072433..30072457 (25 bp)
GTCGCTACTCAAAACCTTCGTGAAG
LOC_Os06g49700
Os.7854.1.S2_at--821--5171Chr06:30072537..30072561 (25 bp)
GCAAGTTCATGTGTCTGTTCCAAGA
LOC_Os06g49700
Os.7854.1.S2_at--309--8051Chr06:30072632..30072656 (25 bp)
GGAGCGGAACTTGCCAACTTGGTAG
LOC_Os06g49700
Os.7854.1.S2_at--1129--1151Chr06:30072734..30072758 (25 bp)
AGTAAGCCGTCCTCCTTTTTTCATG
LOC_Os06g49700
Target Sequence 
GTACTACTGTACACGTCATGTTACTTATAGATGAGGAATGCCTGGGGGGCTTGGAATTTTCAGACTCGTCAGTTGTTTGG
TTTGAGACGTCCAATTCGTGCCTGAAAATGTCTTTTGACCTGAAAAAAAAGGAGAATTTTCCAGTGTTTGCAGCATAGCT
GATGTGCGTGATGATGTGATCGACATTCAACAAAACGGGTGGTTGCACGTTCTGATTATATTTATGGTTCACACGTAGGC
GACAAAAGGACGAAAATGAGGTCGCTACTCAAAACCTTCGTGAAGAAAGTAGGCGTCAGAAGTGAAAAACTGCACCGAAC
CATACGACCAATCAAAGAACCTGGGAAACAAAAACAGAACAATTGCAAGTTCATGTGTCTGTTCCAAGAGAATTGGGATC
CGGGAGACAGGTGATGAAATTCTACTCATACAGAATTTGACGTAAATATGCAAGATTGTGGAGCGGAACTTGCCAACTTG
GTAGAATTCTTCAGGAGGTTGGTTGATGAGTTGTCTTGTTTGAAACTTTTTGAGTTGAATTGTTGAACGCTTTAAAATAG
AAGTAAGCCGTCCTCCTTTTTTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7854.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis