Browse Element(s) Details


Os.8005.3.S1_x_at

Description gb:BI801178
DB_XREF= gi:16573882
DB_XREF=H041B10
CLONE=H041B10
TID=Os.8005.3
CNT=9
FEA=EST
TIER=Stack
STK=9
UG=Os.8005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-E06, full insert sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1165010/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11610NANA7+6404096..6410245transposon protein, putative, unclassified
LOC_Os07g11620OsAffx.28403.1.S1_at11/117+6411376..6412380hypothetical protein
LOC_Os07g11630Os.6445.1.S1_x_at11/117+6414328..6415011Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11670OsAffx.10221.1.S1_at10/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.12243.1.S1_at4/117+6450126..6455981retrotransposon protein, putative, unclassified
LOC_Os07g11670OsAffx.20517.2.S1_x_at1/117+6450126..6455981retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8005.3.S1_x_at--12--8091Chr07:6431086..6431111 (25 bp)
GGAGCTCCCGCAGTGCCGATGCAGT
LOC_Os07g11650
Os.8005.3.S1_x_at--86--5911Chr07:6431085..6431110 (25 bp)
GAGCTCCCGCAGTGCCGATGCAGTG
LOC_Os07g11650
Os.8005.3.S1_x_at--1043--7711Chr07:6430868..6430892 (25 bp)
GGGTGGCATGGATTAACTTCCTTAG
LOC_Os07g11650
Os.8005.3.S1_x_at--1021--7711Chr07:6430867..6430891 (25 bp)
GGTGGCATGGATTAACTTCCTTAGT
LOC_Os07g11650
Os.8005.3.S1_x_at--3--9091Chr07:6430765..6430789 (25 bp)
TGCTAGTAGCATCTATCATGTTTGG
LOC_Os07g11650
Os.8005.3.S1_x_at--423--6871Chr07:6430746..6430770 (25 bp)
GTTTGGATGCTGCTTTCTCCGTGAA
LOC_Os07g11650
Os.8005.3.S1_x_at--175--10251Chr07:6430745..6430769 (25 bp)
TTTGGATGCTGCTTTCTCCGTGAAT
LOC_Os07g11650
Os.8005.3.S1_x_at--190--10871Chr07:6430744..6430768 (25 bp)
TTGGATGCTGCTTTCTCCGTGAATG
LOC_Os07g11650
Os.8005.3.S1_x_at--1039--8551Chr07:6430743..6430767 (25 bp)
TGGATGCTGCTTTCTCCGTGAATGT
LOC_Os07g11650
Os.8005.3.S1_x_at--158--7991Chr07:6430742..6430766 (25 bp)
GGATGCTGCTTTCTCCGTGAATGTG
LOC_Os07g11650
Os.8005.3.S1_x_at--248--3071NONE
AATAAATAAGACAGAGTTGGATTCA
NONE
Target Sequence 
GGAGCTCCCGCAGTGCCGATGCAGTGCCGGTGCGACGCGTTGAGCGTGCTGGTGCNNNGGCGTGGTCACNGNAGGAGGGC
NNACCGCGTCNCCNGGGATGATCTCGCAGCACNNNNGGCGCCCGGGTGCGACGCCNGCGACGATCGCCNGGGATGGCGAG
CGCNGCNTGACGGACTACGGCCGGTGCAACCNTGCAGCACNACNTGGTTTCTTTGGCTGCCCCNATGTTTGGGGGTGGCA
TGGATTAACTTCCTTAGTAATTAATTAATTAGGCCTTTGCTTAATTAATTATTTAATTAGTTATCCGGGTTACTGGATAA
TTAATTATCGATATTTGCTAGTAGCATCTATCATGTTTGGATGCTGCTTTCTCCGTGAATGTGATGATAATAATAATCNA
GAAGNAAATAAATAAGACAGAGTTGGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8005.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis