Browse Element(s) Details


Os.6445.1.S1_x_at

Description gb:AK107674.1
DB_XREF= gi:32992883
TID=Os.6445.1
CNT=58
FEA=FLmRNA
TIER=FL+Stack
STK=30
UG=Os.6445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-131-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-131-H12, full insert sequence.
FL= gb:AK107674.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1163011/11Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g116501/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g11590OsAffx.22848.4.S1_at2/117+6389103..6393821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11590OsAffx.22848.4.S1_x_at1/117+6389103..6393821retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11600NANA7+6400154..6403451retrotransposon protein, putative, unclassified
LOC_Os07g11610NANA7+6404096..6410245transposon protein, putative, unclassified
LOC_Os07g11620OsAffx.28403.1.S1_at11/117+6411376..6412380hypothetical protein
LOC_Os07g11630Os.6445.1.S1_x_at11/117+6414328..6415011Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11640Os.8606.1.S1_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11640OsAffx.22947.1.S1_x_at1/117+6425345..6429933retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g11650Os.8005.2.S1_x_at11/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.8005.3.S1_x_at10/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11650Os.6445.1.S1_x_at1/117+6430681..6431409Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g11659OsAffx.10222.1.S1_x_at9/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.28406.1.S1_x_at8/117+6437346..6438294NA
LOC_Os07g11659OsAffx.10222.1.S1_at8/117+6437346..6438294NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6445.1.S1_x_at--527--4011Chr07:6414818..6414842 (25 bp)
CGTCGTGCCGGAACTACATCGCGCG
LOC_Os07g11630
Os.6445.1.S1_x_at--885--9172Chr07:6431182..6431206 (25 bp)
TGCCGGAACTACATCGCGCGGTGGT
LOC_Os07g11650
Os.6445.1.S1_x_at--137--9031Chr07:6414536..6414560 (25 bp)
TGCAGCACACGGCCGGTTCCTTTGC
LOC_Os07g11630
Os.6445.1.S1_x_at--603--1471Chr07:6414533..6414557 (25 bp)
AGCACACGGCCGGTTCCTTTGCCTG
LOC_Os07g11630
Os.6445.1.S1_x_at--973--3671Chr07:6414517..6414541 (25 bp)
CTTTGCCTGCCTCATGTTTGGTGGT
LOC_Os07g11630
Os.6445.1.S1_x_at--59--10291Chr07:6414516..6414540 (25 bp)
TTTGCCTGCCTCATGTTTGGTGGTG
LOC_Os07g11630
Os.6445.1.S1_x_at--662--10691Chr07:6414515..6414539 (25 bp)
TTGCCTGCCTCATGTTTGGTGGTGG
LOC_Os07g11630
Os.6445.1.S1_x_at--353--4471Chr07:6414513..6414537 (25 bp)
GCCTGCCTCATGTTTGGTGGTGGCA
LOC_Os07g11630
Os.6445.1.S1_x_at--929--4271Chr07:6414512..6414536 (25 bp)
CCTGCCTCATGTTTGGTGGTGGCAT
LOC_Os07g11630
Os.6445.1.S1_x_at--282--10831Chr07:6414500..6414524 (25 bp)
TTGGTGGTGGCATGGATTAGATTAA
LOC_Os07g11630
Os.6445.1.S1_x_at--1050--9731Chr07:6414431..6414455 (25 bp)
TAATTATCGATGTTTGCTAGTACTA
LOC_Os07g11630
Target Sequence 
CGTCGTGCCGGAACTACATCGCGCGGTGGTGCGCCGCCGCCGGGGGCCGCATGGACTCCCGCAAGCAGCCGCCGCGGGAG
TTCCTGGAGCCNGTGCTGCCGGGAGCTCGCCGCCGTGCCGATGCAGTGCCGGTGCGACGCGCTGAGCGTGCTGGTGCGCG
GCGTGGTCACGGAGGAGGGCGACCGCGTCTCCGGGATGATCTCCCAGCACGCGGCACCGGGGTGCGACGCCGCGACGATC
GCCGGGATGGCGAGCGCGCTGACGGACTACGGCCGGTGCAACCTGCAGCACACGGCCGGTTCCTTTGCCTGCCTCATGTT
TGGTGGTGGCATGGATTAGATTAATTATTTCATTAGTGATTAATTAATTAATTAGGCCTTTGCTTAATTAATTATCGATG
TTTGCTAGTACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6445.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis