Browse Element(s) Details


Os.8271.1.S1_a_at

Description gb:AK101205.1
DB_XREF= gi:32986414
TID=Os.8271.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0035F12.13 (P0035F12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030O21, full insert sequence.
FL= gb:AK065658.1 gb:AK101205.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6750011/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8271.1.S1_a_at--449--4451Chr01:39549690..39549714 (25 bp)
GCCTTTTGGTGATGTGCTCAGCCGA
LOC_Os01g67500
Os.8271.1.S1_a_at--256--10251Chr01:39549686..39549710 (25 bp)
TTTGGTGATGTGCTCAGCCGATGAC
LOC_Os01g67500
Os.8271.1.S1_a_at--862--7391Chr01:39549682..39549706 (25 bp)
GTGATGTGCTCAGCCGATGACAAGT
LOC_Os01g67500
Os.8271.1.S1_a_at--857--8691Chr01:39549678..39549702 (25 bp)
TGTGCTCAGCCGATGACAAGTGCAT
LOC_Os01g67500
Os.8271.1.S1_a_at--283--5311Chr01:39549584..39549608 (25 bp)
GAAGGAGAAGTCCCAGAAGCTGCTC
LOC_Os01g67500
Os.8271.1.S1_a_at--757--3831Chr01:39549565..39549589 (25 bp)
CTGCTCAAGCTGTTCCGGGAGCAAA
LOC_Os01g67500
Os.8271.1.S1_a_at--161--2691Chr01:39549559..39549583 (25 bp)
AAGCTGTTCCGGGAGCAAAGGCAGC
LOC_Os01g67500
Os.8271.1.S1_a_at--312--7611Chr01:39549528..39549552 (25 bp)
GGGCACAGCCTGTGCCGCAGCAAGC
LOC_Os01g67500
Os.8271.1.S1_a_at--1004--1671Chr01:39549522..39549546 (25 bp)
AGCCTGTGCCGCAGCAAGCTCAGCA
LOC_Os01g67500
Os.8271.1.S1_a_at--846--3911Chr01:39549465..39549489 (25 bp)
CGGGAGAGACCGGTAACGGCACCAT
LOC_Os01g67500
Os.8271.1.S1_a_at--608--6011Chr01:39549462..39549486 (25 bp)
GAGAGACCGGTAACGGCACCATGGT
LOC_Os01g67500
Target Sequence 
GCCTTTTGGTGATGTGCTCAGCCGATGACAAGTGCATCGCACCGGTGCTGCAGGAAGGAGTGGTGCCTTCCTTGGTTTCC
ATCTCGGCAACCGGCACAGGCAAGGGGAAGGAGAAGTCCCAGAAGCTGCTCAAGCTGTTCCGGGAGCAAAGGCAGCGAGA
TGGGGCACAGCCTGTGCCGCAGCAAGCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGGAGAGACCGGTA
ACGGCACCATGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8271.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis