Browse Element(s) Details


Os.8271.2.S1_x_at

Description gb:NM_190311.1
DB_XREF= gi:34907705
GEN=P0035F12.13
TID=Os.8271.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0035F12.13 (P0035F12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0035F12.13 (P0035F12.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g675007/11armadillo/beta-catenin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67459NANA1+39531454..39531706NA
LOC_Os01g67468NANA1+39533959..39534768NA
LOC_Os01g67480Os.50489.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67480Os.12030.1.S1_at11/111+39538156..39543454Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g67490OsAffx.23959.2.S1_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.26271.1.A1_s_at11/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67490Os.42585.1.S1_at10/111+39543428..39546305OTU-like cysteine protease family protein, expressed
LOC_Os01g67500Os.8271.1.S1_a_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.1.S1_at11/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67500Os.8271.2.S1_x_at7/111+39549117..39553422armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os01g67510Os.18205.1.S1_at10/111+39565700..39570792Protein recA, putative, expressed
LOC_Os01g67520Os.49594.1.S1_at11/111+39571459..39573977VTC2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8271.2.S1_x_at--617--4671Chr01:39549901..39549925 (25 bp)
GCGGGCATTGTGGAAGCTCTTCACT
LOC_Os01g67500
Os.8271.2.S1_x_at--18--2151Chr01:39549835..39549859 (25 bp)
ACAGAGAAGGCCCTTGCAGTGCTCA
LOC_Os01g67500
Os.8271.2.S1_x_at--558--10711Chr01:39549804..39549828 (25 bp)
TTGCGGCAACCCAAGCTGGCAGAAA
LOC_Os01g67500
Os.8271.2.S1_x_at--911--5511Chr01:39549783..39549807 (25 bp)
GAAAAGATATCATGTCCACCCCAGG
LOC_Os01g67500
Os.8271.2.S1_x_at--776--1031Chr01:39549761..39549785 (25 bp)
AGGTCTGATCAGCACCTTGGCGATG
LOC_Os01g67500
Os.8271.2.S1_x_at--450--4451Chr01:39549690..39549714 (25 bp)
GCCTTTTGGTGATGTGCTCAGCCGA
LOC_Os01g67500
Os.8271.2.S1_x_at--374--1451Chr01:39549570..39549594 (25 bp)
AGAAGCTGCTCAAGCTGTTCCGGGA
LOC_Os01g67500
Os.8271.2.S1_x_at--319--9811Chr01:39548992..39549476 (25 bp)
TAACGGCACCATGGTTCACTCATGC
NONE
Os.8271.2.S1_x_at--872--7871Chr01:39548980..39549004 (25 bp)
GGTTCACTCATGCAGATACTTGTCT
NONE
Os.8271.2.S1_x_at--333--271Chr01:39548965..39548989 (25 bp)
ATACTTGTCTTCAGGAGGCCCAACT
NONE
Os.8271.2.S1_x_at--542--5591Chr01:39548934..39548958 (25 bp)
GAAATTCAACATCAGACAGCTCAAG
NONE
Target Sequence 
GCGGGCATTGTGGAAGCTCTTCACTCTCTCCTTTCGGAGTCCCTGGCGTCTGAGGGCCTGGGTTGGACAGAGAAGGCCCT
TGCAGTGCTCATCAGCCTTGCGGCAACCCAAGCTGGCAGAAAAGATATCATGTCCACCCCAGGTCTGATCAGCACCTTGG
CGATGCTGCTGGACACCGGCGAGCCAACAGAGCAGGAGCAGTCGGTGTCCTGCCTTTTGGTGATGTGCTCAGCCGATGAC
AAGTGCATNGNACCGGTGCTNCANGGAAGGAGTNGTGCCTTCCTTGGTTTCCATNTNGGCAACCGGCACAGGCAAGGGGA
AGGAGAAGTCCCAGAAGCTGCTCAAGCTGTTCCGGGAGCAAAGGCAGCGAGATGGGGCACAGCCTGTGCCGCAGCAAGCT
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGCGGGAGAGACCGGTAACGGCACCATGGTTCACTCATGCAGATA
CTTGTCTTCAGGAGGCCCAACTGCTCAAGAAATTCAACATCAGACAGCTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8271.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis