Browse Element(s) Details


Os.8342.1.S1_at

Description gb:AK103237.1
DB_XREF= gi:32988446
TID=Os.8342.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033123F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033123F08, full insert sequence.
FL= gb:AK103237.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4386011/11SNF7 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43840Os.48042.1.S1_at11/113+24528744..24533424zinc finger protein, putative, expressed
LOC_Os03g43850Os.24948.1.A1_at9/113+24545620..24550666DNA repair protein recA, chloroplast precursor, putative, expressed
LOC_Os03g43860Os.8342.1.S1_at11/113+24550991..24554575SNF7 family protein, expressed
LOC_Os03g43870OsAffx.3505.1.S1_at11/113+24563639..24564169hypothetical protein
LOC_Os03g43880OsAffx.25525.1.S1_at11/113+24570524..24572122Patatin-like phospholipase family protein, expressed
LOC_Os03g43890Os.37345.1.S1_s_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed
LOC_Os03g43890Os.37345.1.S1_at11/113+24575491..24583690WD-40 repeat protein MSI1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8342.1.S1_at--424--2271Chr03:24552300..24552390 (25 bp)
AAATCAGTTGGACATGACGCTTGAA
LOC_Os03g43860
Os.8342.1.S1_at--960--1831Chr03:24551766..24551788 (23 bp)
ACGCTTGAAATGATGTCCGATGCTA
LOC_Os03g43860
Os.8342.1.S1_at--185--9911Chr03:24551571..24551716 (25 bp)
TACTAACCAGGTTCTTGATGAGATT
LOC_Os03g43860
Os.8342.1.S1_at--687--31Chr03:24551550..24551573 (24 bp)
ATTGGTGTTGATGTGGCTTCTCAGC
LOC_Os03g43860
Os.8342.1.S1_at--257--3871Chr03:24551426..24551450 (25 bp)
CTGTCTTCAGCTCCTAAAGGTCGTA
LOC_Os03g43860
Os.8342.1.S1_at--266--2311Chr03:24551411..24551435 (25 bp)
AAAGGTCGTATTGCGGCGAGCAACA
LOC_Os03g43860
Os.8342.1.S1_at--737--5951Chr03:24551271..24551400 (25 bp)
GAGCAACCAAGCACGAAATGCCGCT
LOC_Os03g43860
Os.8342.1.S1_at--42--351Chr03:24551236..24551260 (25 bp)
ATAACGTGGAGCCTGAATCCTCTGC
LOC_Os03g43860
Os.8342.1.S1_at--887--4511Chr03:24551173..24551197 (25 bp)
GCCGCATCTGAGCAGCTGATAAATA
LOC_Os03g43860
Os.8342.1.S1_at--676--6831Chr03:24551116..24551140 (25 bp)
GTTTCACTCAACATAGCTTGTCTGA
LOC_Os03g43860
Os.8342.1.S1_at--1116--10731Chr03:24551040..24551064 (25 bp)
TTGAACCTTCGGATTTTCTATGGAA
LOC_Os03g43860
Target Sequence 
AAATCAGTTGGACATGACGCTTGAAATGATGTCCGATGCTATAGATGAAACACTTGATAAGGACGAGGCAGAAGAGGAAA
CAGAAGAACTTACTAACCAGGTTCTTGATGAGATTGGTGTTGATGTGGCTTCTCAGCTGTCTTCAGCTCCTAAAGGTCGT
ATTGCGGCGAGCAACAGGAAAGCTGAGAGCAACCAAGCACGAAATGCCGCTCCCCCCAGAAATAACGTGGAGCCTGAATC
CTCTGCTGAAGTTGACGACCTGGAGAGGAGACTGGCTTCNCTTCGCCGCATCTGAGCAGCTGATAAATATATAGTGCATC
TATAATTCTATATGTAAATTTGTTTCACTCAACATAGCTTGTCTGAATATGTGCGAGTAGAGTATTGTAGGCAAACAACA
AGATTTAAATAACATAATTGAACCTTCGGATTTTCTATGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis