Browse Element(s) Details


Os.8416.1.S1_at

Description gb:AK071787.1
DB_XREF= gi:32981810
TID=Os.8416.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.8416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 23484 heavy meromyosin-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110P10, full insert sequence.
FL= gb:AY224542.1 gb:AK071787.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5753010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed
LOC_Os03g57510OsAffx.13524.1.S1_at11/113+32730579..32733924Calcium-dependent protein kinase, isoform AK1, putative
LOC_Os03g57520OsAffx.13525.1.S1_x_at11/113+32736937..32737440VQ motif family protein, expressed
LOC_Os03g57530Os.8416.1.S1_at10/113+32739529..32741924expressed protein
LOC_Os03g57540NANA3+32749194..32749616hypothetical protein
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57570NANA3+32766262..32767014hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8416.1.S1_at--728--2751Chr03:32740876..32740900 (25 bp)
AAGAAAGTGGCTGCCTCACCACGAA
LOC_Os03g57530
Os.8416.1.S1_at--1065--1091Chr03:32740045..32740069 (25 bp)
AGTGGGTGCTCTCGATAATCTTTTG
LOC_Os03g57530
Os.8416.1.S1_at--718--1211Chr03:32739919..32740034 (25 bp)
AGTTCCACAGCCAGGTATACCTTCG
LOC_Os03g57530
Os.8416.1.S1_at--238--291Chr03:32739903..32739927 (25 bp)
ATACCTTCGGTCTGTCAACTACGTT
LOC_Os03g57530
Os.8416.1.S1_at--1--9111Chr03:32739861..32739885 (25 bp)
TGCTCGACAGATCCACCATGTTGAG
LOC_Os03g57530
Os.8416.1.S1_at--1015--4311Chr03:32739797..32739821 (25 bp)
CCTTCCCGGGCATATTGTCTATAAA
LOC_Os03g57530
Os.8416.1.S1_at--546--8211Chr03:32739763..32739787 (25 bp)
GGAATCATTGTTTACAGCTTCATTG
LOC_Os03g57530
Os.8416.1.S1_at--83--9071Chr03:32739725..32739749 (25 bp)
TGCATTCTTTGACATGTTCTTCCTC
LOC_Os03g57530
Os.8416.1.S1_at--1115--10351Chr03:32739692..32739716 (25 bp)
TTTTTCTTTTTTGCCCAAGCACAGT
LOC_Os03g57530
Os.8416.1.S1_at--2--8091Chr03:32739581..32739605 (25 bp)
GGAGCTAACTGACATGCTCTGTGTA
LOC_Os03g57530
Os.8416.1.S1_at--1007--9471Chr03:32739529..32739553 (25 bp)
TCTGATCTTGTTTGCGCGGTTGCCG
NONE
Target Sequence 
AAGAAAGTGGCTGCCTCACCACGAAGCTTCTCGGTGCTAGGGGTTTGCAAGTGGGTGCTCTCGATAATCTTTTGGAGAAA
CAGAAGTTCCACAGCCAGGTATACCTTCGGTCTGTCAACTACGTTCCTTGGCTTCCTACTGCTGCTCGACAGATCCACCA
TGTTGAGTCCCTGGCGTCGTCTGCCTAGCCCACNGGCAANTGAAACGACCTTCCCGGGCATATTGTCTATAAATCAGAAC
CTGGAATCATTGTTTACAGCTTCATTGTAAGTGTGTGTATTGCATTCTTTGACATGTTCTTCCTCTTCTTTTTTTTTTCT
TTTTTGCCCAAGCACAGTTTTTGAGCTGTATGTTTTTATTTGGAAGCTTTGAGCTTGTCTTATAGTGTGTTTATTCAAAC
CTAGGCGTGAATAGCTTGTAATCAGGAGCTAACTGACATGCTCTGTGTAGAGTGTACATCATAGTAAGCTATGGAATCTG
ATCTTGTTTGCGCGGTTGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis