Browse Element(s) Details


OsAffx.13525.1.S1_x_at

Description tigr:9631.m05647
TID=OsAffx.13525.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5752011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57480NANA3+32705894..32711984retrotransposon protein, putative, unclassified
LOC_Os03g57490Os.23180.1.S1_at11/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57490Os.25125.1.A1_at10/113+32717322..32721635beta-Ig-H3 domain-containing protein, putative, expressed
LOC_Os03g57500Os.26475.1.S1_at9/113+32722460..32726254zinc finger family protein, putative, expressed
LOC_Os03g57510OsAffx.13524.1.S1_at11/113+32730579..32733924Calcium-dependent protein kinase, isoform AK1, putative
LOC_Os03g57520OsAffx.13525.1.S1_x_at11/113+32736937..32737440VQ motif family protein, expressed
LOC_Os03g57530Os.8416.1.S1_at10/113+32739529..32741924expressed protein
LOC_Os03g57540NANA3+32749194..32749616hypothetical protein
LOC_Os03g57560OsAffx.13526.1.S1_x_at11/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.50897.1.S1_at10/113+32751130..32761912Piwi domain containing protein, expressed
LOC_Os03g57560Os.51403.1.S1_at1/113+32751130..32761912Piwi domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13525.1.S1_x_at--102--9391Chr03:32736973..32736997 (25 bp)
TCGAGGAGAGGTGGGCTGCGAGGGC
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--721--891Chr03:32737000..32737024 (25 bp)
AGGCCGCTGCCGCTGAAGGTGTCGT
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--769--4011Chr03:32737055..32737079 (25 bp)
CGTCGGCGTCAAAGGGGGCATCCAA
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--851--9691Chr03:32737063..32737087 (25 bp)
TCAAAGGGGGCATCCAAGAAGTCGG
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--576--8751Chr03:32737106..32737130 (25 bp)
TGTACGAGCACACGCCCAAGGTGGT
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--481--5951Chr03:32737111..32737135 (25 bp)
GAGCACACGCCCAAGGTGGTGCACG
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--195--1831Chr03:32737133..32737157 (25 bp)
ACGCGCGGCCGCAGGAGTTCATGAC
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--1149--10431Chr03:32737150..32737174 (25 bp)
TTCATGACCGTCGTGCAGCGGCTGA
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--912--7331Chr03:32737162..32737186 (25 bp)
GTGCAGCGGCTGACGGGCAAGCCAC
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--619--4491Chr03:32737197..32737221 (25 bp)
GCCGGTGATGATGCCGGCGTACGAC
LOC_Os03g57520
OsAffx.13525.1.S1_x_at--861--871Chr03:32737354..32737378 (25 bp)
ATGGCCGCCGGCATGCTGCTGTCGC
LOC_Os03g57520
Target Sequence 
TCGAGGAGAGGTGGGCTGCGAGGGCCGAGGCCGCTGCCGCTGAAGGTGTCGTCGTCGTCGTCGAGGGGGTCGTCGCCGTC
GTCGTCGGCGTCAAAGGGGGCATCCAAGAAGTCGGCGGCGGCGCCGGTGATCGTGTACGAGCACACGCCCAAGGTGGTGC
ACGCGCGGCCGCAGGAGTTCATGACCGTCGTGCAGCGGCTGACGGGCAAGCCACCGGCGGCGCCGCCGGTGATGATGCCG
GCGTACGACGCGCCGGCGATGGTCGAGCAGGGCGCGGCGGCAGCATGCGGCGCCGGCGGCGACCCGCTGCTCCTCACCCT
CGGCCAGCGCCAGGCCGCGGCGTCGGCGCCGGCGCAGCCTCCGGCGGTGCCGTCGCCGATGATGGCCGCCGGCATGCTGC
TGTCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13525.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis