Browse Element(s) Details


Os.8606.1.S1_at

Description gb:AK120082.1
DB_XREF= gi:37989705
TID=Os.8606.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8606 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014C18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013014C18, full insert sequence.
FL= gb:AK120082.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3097411/11expressed protein
LOC_Os07g116401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g011001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g065201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g061301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g246801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g120601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30940OsAffx.2815.1.S1_at10/112+18473317..18475479hypothetical protein
LOC_Os02g30950OsAffx.24517.1.S1_at11/112+18484715..18485941hypothetical protein
LOC_Os02g30950OsAffx.18711.1.S1_at1/112+18484715..18485941hypothetical protein
LOC_Os02g30960OsAffx.24518.2.S1_x_at11/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30960OsAffx.19258.2.S1_x_at3/112+18489698..18492227hAT family dimerisation domain containing protein
LOC_Os02g30974Os.8606.1.S1_at11/112+18495365..18503763expressed protein
LOC_Os02g30990NANA2+18504922..18508694retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31000Os.56299.1.S1_at4/112+18509668..18512734retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g31010Os.33661.2.S1_at2/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.11537.1.S1_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31010OsAffx.17040.2.S1_x_at1/112+18514373..18518146retrotransposon protein, putative, unclassified
LOC_Os02g31020OsAffx.2816.1.S1_at11/112+18521053..18524165hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8606.1.S1_at--525--2051Chr02:18495774..18495798 (25 bp)
ACTTATCAGCATTTCATGTCGAAGG
LOC_Os02g30974
Os.8606.1.S1_at--302--2331Chr02:18495717..18495741 (25 bp)
AAAGATTTCGGGAATATGGTCAACG
LOC_Os02g30974
Os.8606.1.S1_at--412--8591Chr02:18495701..18495725 (25 bp)
TGGTCAACGAACAATTTTCTGGGCT
LOC_Os02g30974
Os.8606.1.S1_at--392--171Chr02:18495667..18495691 (25 bp)
ATTTTTTGAAGCGATGTTCATTGCC
LOC_Os02g30974
Os.8606.1.S1_at--295--977Chr11:6712165..6712248 (24 bp)
AGGAGAAGAAGTGACCTGCTGCTGA
LOC_Os11g12060
Os.8606.1.S1_at--1070--9111Chr02:18495574..18495598 (25 bp)
TGCTGATTTCTGACGGGCGTGAGCT
LOC_Os02g30974
Os.8606.1.S1_at--911--5751Chr02:18495563..18495587 (25 bp)
GACGGGCGTGAGCTAAACCAGTTAA
LOC_Os02g30974
Os.8606.1.S1_at--55--2151Chr02:18495472..18495496 (25 bp)
ACAGAGCTGTGTTTTAGTTGAACCT
LOC_Os02g30974
Os.8606.1.S1_at--288--10051Chr02:18495458..18495482 (25 bp)
TAGTTGAACCTGTGCAGTAACGAGA
LOC_Os02g30974
Os.8606.1.S1_at--659--3531Chr02:18495406..18495430 (25 bp)
CATGCTGTGCATGTGGAATTGTTCA
LOC_Os02g30974
Os.8606.1.S1_at--822--8211Chr02:18495392..18495416 (25 bp)
GGAATTGTTCAGTATGTGAGCTCAT
LOC_Os02g30974
Target Sequence 
ACTTATCAGCATTTCATGTCGAAGGTGGTAGAGGGCAGGAAACTACTCTTCTCTGAAAAAGATTTCGGGAATATGGTCAA
CGAACAATTTTCTGGGCTNCTTGATGAATTTTTTGAAGCGATGTTCATTGCCNCGTATTATGCTGACTTACAACTTGNGC
ATACAATGGTGTAAATTGATAAGGAGAAGAAGTGACCTGCTGCTGATTTCTGACGGGCGTGAGCTAAACCAGTTAAGAGT
NCGCATGGTGTAAATGATGAGAGAAGTGGACAGTAGCTGATTGTTAACANCCAATGNGCTAAACAGAGCTGTGTTTTAGT
TGAACCTGTGCAGTAACGAGANCCTTATTGTTTTTTTGTTAAATGTGACATGCTGTGCATGTGGAATTGTTCAGTATGTG
AGCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8606.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis