Browse Element(s) Details


Os.8626.1.S1_x_at

Description gb:AK073485.1
DB_XREF= gi:32983508
TID=Os.8626.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8626 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0038D11.19 (P0038D11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043A18, full insert sequence.
FL= gb:AK073485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3384011/11expressed protein
LOC_Os01g459706/11expressed protein
LOC_Os11g066602/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33820Os.48029.1.S1_at10/1110+17609769..17611142expressed protein
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein
LOC_Os10g33850OsAffx.29627.1.S1_at11/1110+17636496..17638453hypothetical protein
LOC_Os10g33862NANA10+17644205..17645488expressed protein
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein
LOC_Os10g33886Os.46664.1.A1_at2/1110+17656069..17656478hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8626.1.S1_x_at--279--10513Chr11:3240190..3240304 (25 bp)
TTCAACTCATCATCTTGTAAGGCAT
NONE
Os.8626.1.S1_x_at--110--2553Chr11:3240187..3240301 (25 bp)
AACTCATCATCTTGTAAGGCATGGC
NONE
Os.8626.1.S1_x_at--1035--1694Chr11:3240138..3240157 (20 bp)
ACCACATCAAGCCACACCTAAGGAG
LOC_Os11g06660
Os.8626.1.S1_x_at--338--2914Chr11:3240101..3240125 (25 bp)
AAGGATGATGCGAAGGTGCAGCCTT
LOC_Os11g06660
Os.8626.1.S1_x_at--125--7031Chr10:17631446..17631470 (25 bp)
GTACATACGTGATGGCTGCCGGCAT
LOC_Os10g33840
Os.8626.1.S1_x_at--954--9931Chr10:17631441..17631465 (25 bp)
TACGTGATGGCTGCCGGCATGTTGA
LOC_Os10g33840
Os.8626.1.S1_x_at--375--2651Chr10:17631381..17631405 (25 bp)
AAGAAGGACGCGATGAGAAAAGGAA
LOC_Os10g33840
Os.8626.1.S1_x_at--315--5354Chr11:3239865..3239889 (25 bp)
GAAGATCTGCAATGACGACGTCTCC
NONE
Os.8626.1.S1_x_at--320--3014Chr11:3239855..3239879 (25 bp)
AATGACGACGTCTCCGATGAAGCAA
NONE
Os.8626.1.S1_x_at--1099--5754Chr11:3239849..3239873 (25 bp)
GACGTCTCCGATGAAGCAACCGAGA
NONE
Os.8626.1.S1_x_at--730--8854Chr11:3239681..3239707 (24 bp)
TGATGAAACTTTGTTATGATGCCTA
NONE
Target Sequence 
TTCAACTCATCATCTTGTAAGGCATGGCNTCCATGNNNNNNNNGNATGATGTGGATTTTTCACCACATCAAGCCACACCT
AAGGAGTCAATGAACTTCAAGGATGATGCGAAGGTGCAGCCTTCGTCAGGGCAAACACCAAACAAGGGGAATTATTACAT
GGGCCACGCGAATGCCATCATGATGATGTTTCAGTACATACGTGATGGCTGCCGGCATGTTGAGAGTTCCATGGAAGACT
TCAAGTCCAAGAAGGTAGAAGAAGGACGCGATGAGAAAAGGAAGGTGGGAGAAGGGTATGATCCTCGCTGGTCTTCTCCC
ATCGAGATAACAATGAAGATCTGCAATGACGACGTCTCCGATGAAGCAACCGAGAAGGAACCATGATTTAGTATTGTCGC
TACTGTGTTTTGGCCTTACAATAAAATAACATTTCTTGTGAATTACNACAAGAAAATTCAGTACACNAATGTCGTTCAGG
TCCNATTAAGTACTGCTTGTGAAATGCAACCNAAATTTGATGAAACTTTGTTATGATGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8626.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis