Browse Element(s) Details


Os.46665.1.S1_at

Description gb:NM_197022.1
DB_XREF= gi:37535403
TID=Os.46665.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46665 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative membrane-associated salt-inducible protein (OSJNBa0055P24.12), mRNA.
PROD=putative membrane-associated salt-inducibleprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3387411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein
LOC_Os10g33850OsAffx.29627.1.S1_at11/1110+17636496..17638453hypothetical protein
LOC_Os10g33862NANA10+17644205..17645488expressed protein
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein
LOC_Os10g33886Os.46664.1.A1_at2/1110+17656069..17656478hypothetical protein
LOC_Os10g33900Os.46093.1.S1_at11/1110+17671465..17676405expressed protein
LOC_Os10g33910Os.46571.1.S1_at11/1110+17677552..17680311Uncharacterised protein family containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46665.1.S1_at--166--7831Chr10:17653153..17653177 (25 bp)
GGTATTAATGCTGACCCGATAACTT
LOC_Os10g33874
Os.46665.1.S1_at--731--1311Chr10:17653220..17653244 (25 bp)
AGATGGCTTTCCACATACATGACAT
LOC_Os10g33874
Os.46665.1.S1_at--949--671Chr10:17653238..17653262 (25 bp)
ATGACATCATGTTATGCCGTGGCCT
LOC_Os10g33874
Os.46665.1.S1_at--766--8691Chr10:17653263..17653287 (25 bp)
TGTGCCGACACCTGTTACTTATAAC
LOC_Os10g33874
Os.46665.1.S1_at--516--5031Chr10:17653330..17653354 (25 bp)
GCAGAAATACTTTTGGAGTCCCTCA
LOC_Os10g33874
Os.46665.1.S1_at--1116--2031Chr10:17653395..17653419 (25 bp)
ACTTATCAAAGCTCAGTGCGCAAAA
LOC_Os10g33874
Os.46665.1.S1_at--514--2311Chr10:17653417..17653441 (25 bp)
AAAGGAATGCCTATCAATGCTGTTT
LOC_Os10g33874
Os.46665.1.S1_at--520--10531Chr10:17653492..17653516 (25 bp)
TTCAGTGCAGCAATCAATCGACTTT
LOC_Os10g33874
Os.46665.1.S1_at--1113--2311Chr10:17653535..17653559 (25 bp)
AAGAAGCCTTTATGTTTGTCCCGAT
LOC_Os10g33874
Os.46665.1.S1_at--105--6871Chr10:17653548..17653572 (25 bp)
GTTTGTCCCGATTATGCTATCTGTT
LOC_Os10g33874
Os.46665.1.S1_at--655--631Chr10:17653561..17653585 (25 bp)
ATGCTATCTGTTGGTATTTACCCAG
LOC_Os10g33874
Target Sequence 
GGTATTAATGCTGACCCGATAACTTACAATACCCTTATACAAGGTTTCTGTGAATCAGAAAACGTTCAGATGGCTTTCCA
CATACATGACATCATGTTATGCCGTGGCCTTGTGCCGACACCTGTTACTTATAACTTGCTTATTAATGTGCTGTGTTTGA
AGGGAAAAGTTATTCAAGCAGAAATACTTTTGGAGTCCCTCAGAGAAAATGGCATTAAGTTGAGAAAATTTGCGTACACA
ACACTTATCAAAGCTCAGTGCGCAAAAGGAATGCCTATCAATGCTGTTTTGTTAGTTGGTAAGCTTCTAGATGCAGGATT
TGAAGCTTCTATTGAAGATTTCAGTGCAGCAATCAATCGACTTTGCAAAAGACAATTTGCCAAAGAAGCCTTTATGTTTG
TCCCGATTATGCTATCTGTTGGTATTTACCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis