Browse Element(s) Details


Os.46093.1.S1_at

Description gb:AK108805.1
DB_XREF= gi:32994014
TID=Os.46093.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0055P24.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D01, full insert sequence.
FL= gb:AK108805.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3390011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein
LOC_Os10g33886Os.46664.1.A1_at2/1110+17656069..17656478hypothetical protein
LOC_Os10g33900Os.46093.1.S1_at11/1110+17671465..17676405expressed protein
LOC_Os10g33910Os.46571.1.S1_at11/1110+17677552..17680311Uncharacterised protein family containing protein, expressed
LOC_Os10g33920Os.2558.1.S1_a_at11/1110+17682518..17689537integral membrane protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0016831molecular_functioncarboxy-lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46093.1.S1_at--1098--1291Chr10:17675822..17675844 (23 bp)
AGAGGAGTACGTGCCTTACCACGAC
LOC_Os10g33900
Os.46093.1.S1_at--729--5651Chr10:17675842..17675866 (25 bp)
GACAGGGTGGCATCGAAGCTGAACT
LOC_Os10g33900
Os.46093.1.S1_at--1030--6011Chr10:17675869..17675893 (25 bp)
GAGATGGGCCACCTAGGTTACTGAC
LOC_Os10g33900
Os.46093.1.S1_at--866--6771Chr10:17675885..17675909 (25 bp)
GTTACTGACGTACTCACTTACAGCT
LOC_Os10g33900
Os.46093.1.S1_at--17--7311Chr10:17676065..17676089 (25 bp)
GTGCGTGCGTCCATTTTGTATATGT
LOC_Os10g33900
Os.46093.1.S1_at--743--2071Chr10:17676125..17676149 (25 bp)
ACTTGGATGCTTGATGTCCTCTTGA
LOC_Os10g33900
Os.46093.1.S1_at--324--10791Chr10:17676146..17676170 (25 bp)
TTGATCTTCTACCTAGCTACCGAGA
LOC_Os10g33900
Os.46093.1.S1_at--404--91Chr10:17676242..17676266 (25 bp)
ATTCCAGTAGCGTATGTATGTCAGT
LOC_Os10g33900
Os.46093.1.S1_at--497--6491Chr10:17676276..17676300 (25 bp)
GATATCCAGATTCGATTGACCACAG
LOC_Os10g33900
Os.46093.1.S1_at--877--6811Chr10:17676308..17676332 (25 bp)
GTTTTTGTATCACCCTCGTAATGCA
LOC_Os10g33900
Os.46093.1.S1_at--535--6211Chr10:17676354..17676378 (25 bp)
GAGGCTGACTCATTGATCTGACTGA
LOC_Os10g33900
Target Sequence 
AGAGGAGTACGTGCCTTACCACGACAGGGTGGCATCGAAGCTGAACTGGGAGATGGGCCACCTAGGTTACTGACGTACTC
ACTTACAGCTGCAGCAAATTGCCAGACAGCAATGGCGATCGATCGATCAGAAGACGTAGGAGGAGGAGGAAGAAGAAGAA
GAAGAATCAAGTCGATCGACTCATCATCAAGAAGCTGGGAAAGATTTGGTTGATGCAGCTAGAAAGCCAAGAACGAGAGT
GTGGCGTGCGTGCGTCCATTTTGTATATGTTTGCTTCGATCAGGGGCAGCTTGAATACTGTAGTAACTTGGATGCTTGAT
GTCCTCTTGATCTTCTACCTAGCTACCGAGATAAGAACTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAG
TAGTAGTAGTAGTAGTAGTATTCCAGTAGCGTATGTATGTCAGTAATTTTCAAGATATCCAGATTCGATTGACCACAGCA
AAGTTGTTTTTGTATCACCCTCGTAATGCAATGTGTGTAACTAAGCGTTGAGAGGCTGACTCATTGATCTGACTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis