Browse Element(s) Details


Os.2558.1.S1_a_at

Description gb:AK109405.2
DB_XREF= gi:42821719
TID=Os.2558.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2558 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glucose-6-phosphatephosphate-translocator (OSJNBa0055P24.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H02, full insert sequence.
FL= gb:AK109405.2 gb:AK103346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3392011/11integral membrane protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33900Os.46093.1.S1_at11/1110+17671465..17676405expressed protein
LOC_Os10g33910Os.46571.1.S1_at11/1110+17677552..17680311Uncharacterised protein family containing protein, expressed
LOC_Os10g33920Os.2558.1.S1_a_at11/1110+17682518..17689537integral membrane protein, putative, expressed
LOC_Os10g33930Os.3107.1.S1_at11/1110+17707155..17711418pleckstrin homology domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2558.1.S1_a_at--826--2771Chr10:17689202..17689226 (25 bp)
AAGAGCGCGTTCAGCCGGCCGTGAC
LOC_Os10g33920
Os.2558.1.S1_a_at--673--9151Chr10:17689252..17689276 (25 bp)
TGCGCGCGTGACAGCTAGGACTGTA
LOC_Os10g33920
Os.2558.1.S1_a_at--154--1571Chr10:17689276..17689300 (25 bp)
AGCTAGTGCAATTTGGGCTGCGACA
LOC_Os10g33920
Os.2558.1.S1_a_at--824--8311Chr10:17689291..17689315 (25 bp)
GGCTGCGACAGCACAAGGAGAATTT
LOC_Os10g33920
Os.2558.1.S1_a_at--360--5491Chr10:17689325..17689349 (25 bp)
GAACATATCATATGCGTCTCATCTC
LOC_Os10g33920
Os.2558.1.S1_a_at--110--271Chr10:17689334..17689358 (25 bp)
ATATGCGTCTCATCTCACCGCAGTT
LOC_Os10g33920
Os.2558.1.S1_a_at--157--5631Chr10:17689388..17689412 (25 bp)
GACGTAATGTGTTGGTTTGTTGAAA
LOC_Os10g33920
Os.2558.1.S1_a_at--734--5391Chr10:17689430..17689454 (25 bp)
GAAGCATCGAGAGGTTCTGACAGAT
LOC_Os10g33920
Os.2558.1.S1_a_at--923--10511Chr10:17689444..17689468 (25 bp)
TTCTGACAGATATGCTAACTCCGTT
LOC_Os10g33920
Os.2558.1.S1_a_at--154--1271Chr10:17689451..17689475 (25 bp)
AGATATGCTAACTCCGTTCACAAAT
LOC_Os10g33920
Os.2558.1.S1_a_at--825--6751Chr10:17689466..17689490 (25 bp)
GTTCACAAATATAAGCACTTCTAGA
LOC_Os10g33920
Target Sequence 
AAGAGCGCGTTCAGCCGGCCGTGACGACGACGACGACGAGGGCGGACGCGTGCGCGCGTGACAGCTAGGACTGTAGCTAG
TGCAATTTGGGCTGCGACAGCACAAGGAGAATTTGGGGGGAAAGAACATATCATATGCGTCTCATCTCACCGCAGTTCTT
TCTGTTCTTTTTTTGTTGTAGATGATGACGTAATGTGTTGGTTTGTTGAAATTTTTAATGGTTCTTGGGAAGCATCGAGA
GGTTCTGACAGATATGCTAACTCCGTTCACAAATATAAGCACTTCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2558.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis