Browse Element(s) Details


Os.8626.3.S1_x_at

Description gb:NM_197018.1
DB_XREF= gi:37535395
TID=Os.8626.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8626 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0055P24.7), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3384010/11expressed protein
LOC_Os01g459704/11expressed protein
LOC_Os11g066601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33820Os.48029.1.S1_at10/1110+17609769..17611142expressed protein
LOC_Os10g33830OsAffx.22433.2.S1_at10/1110+17615891..17627535MATH domain containing protein
LOC_Os10g33840Os.8626.1.S1_a_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_s_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.1.S1_x_at11/1110+17631084..17635089expressed protein
LOC_Os10g33840Os.8626.3.S1_x_at10/1110+17631084..17635089expressed protein
LOC_Os10g33850OsAffx.29627.1.S1_at11/1110+17636496..17638453hypothetical protein
LOC_Os10g33862NANA10+17644205..17645488expressed protein
LOC_Os10g33874Os.46665.1.S1_at11/1110+17650903..17656065expressed protein
LOC_Os10g33874Os.46664.1.A1_at9/1110+17650903..17656065expressed protein
LOC_Os10g33886Os.46664.1.A1_at2/1110+17656069..17656478hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8626.3.S1_x_at--946--10192Chr10:17632585..17632609 (25 bp)
TATTTGAGGACTCCTGCTCTGCTGG
LOC_Os10g33840
Os.8626.3.S1_x_at--787--9091Chr10:17632571..17632595 (25 bp)
TGCTCTGCTGGTGACTACTTCACTC
LOC_Os10g33840
Os.8626.3.S1_x_at--625--7374Chr03:30460959..30460982 (24 bp)
GTGACTACTTCACTCCAGTTATTCA
NONE
Os.8626.3.S1_x_at--78--1211NONE
AGTTATTCAAGGCATGGCATCCATG
NONE
Os.8626.3.S1_x_at--244--4333Chr10:17631600..17631624 (25 bp)
CCATGTATGATGTGGATTTTTCACC
LOC_Os10g33840
Os.8626.3.S1_x_at--339--2914Chr11:3240101..3240125 (25 bp)
AAGGATGATGCGAAGGTGCAGCCTT
LOC_Os11g06660
Os.8626.3.S1_x_at--124--7031Chr10:17631446..17631470 (25 bp)
GTACATACGTGATGGCTGCCGGCAT
LOC_Os10g33840
Os.8626.3.S1_x_at--317--5354Chr11:3239865..3239889 (25 bp)
GAAGATCTGCAATGACGACGTCTCC
NONE
Os.8626.3.S1_x_at--973--1854Chr11:3239851..3239875 (25 bp)
ACGACGTCTCCGATGAAGCAACCGA
NONE
Os.8626.3.S1_x_at--821--7031Chr10:17631180..17631204 (25 bp)
GTACACAATGTCGTTCAGGTCCATT
LOC_Os10g33840
Os.8626.3.S1_x_at--610--1031Chr10:17631164..17631188 (25 bp)
AGGTCCATTAAGTACTGCTTGTGAA
LOC_Os10g33840
Target Sequence 
TATTTGAGGACTCCTGCTCTGCTGGTGACTACTTCACTCCAGTTATTCAAGGCATGGCATCCATGTATGATGTGGATTTT
TCACCACATCAAGCCACACCTAAGGAGTCAATGAACTTCAAGGATGATGCGAAGGTGCAGCCTTCGTCAGGGCAAACACC
AAACAAGGGGAATTATTACATGGGCCACGCGAATGCCATCATGATGATGTTTCAGTACATACGTGATGGCTGCCGGCATG
TTGAGAGTTCCATGGAAGACTTCAAGTCCAAGAAGGTAGAAGAAGGACGCGATGAGAAAAGGAAGGTGGGAGAAGGGTAT
GATCCTCGCTGGTCTTCTCCCATCGAGATAACAATGAAGATCTGCAATGACGACGTCTCCGATGAAGCAACCGAGAAGGA
ACCATGATTTAGTATTGTCGCTACTGTGTTTTGGCCTTACAATAAAATAACATTTCTTGTGAATTACACAAGAAAATTCA
GTACACAATGTCGTTCAGGTCCATTAAGTACTGCTTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8626.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis