Browse Element(s) Details


Os.8903.1.S1_at

Description gb:AK111793.1
DB_XREF= gi:37988456
TID=Os.8903.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8903 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023090I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023090I20, full insert sequence.
FL= gb:AK111793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4554011/11zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45510OsAffx.15938.1.S1_s_at11/116+27529120..27531711Thioredoxin family protein, expressed
LOC_Os06g45520NANA6+27534009..27540107retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45530NANA6+27540440..27543311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g45540Os.8903.1.S1_at11/116+27556203..27560600zinc-binding protein, putative, expressed
LOC_Os06g45550OsAffx.15939.1.S1_at11/116+27571576..27572064hypothetical protein
LOC_Os06g45560NANA6+27582937..27589320retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8903.1.S1_at--1097--4171Chr06:27560133..27560157 (25 bp)
CCCAGATCGTGCTGTCACTGAACAA
LOC_Os06g45540
Os.8903.1.S1_at--1136--2191Chr06:27560154..27560178 (25 bp)
ACAACAGGAGGAAGGGCGCCCCACA
LOC_Os06g45540
Os.8903.1.S1_at--183--431Chr06:27560197..27560221 (25 bp)
ATCATCATCAGATCGTCACGTACGC
LOC_Os06g45540
Os.8903.1.S1_at--1080--1171Chr06:27560206..27560230 (25 bp)
AGATCGTCACGTACGCGTAAACCGT
LOC_Os06g45540
Os.8903.1.S1_at--875--7031Chr06:27560222..27560246 (25 bp)
GTAAACCGTGTTTCGATCGCTAGTA
LOC_Os06g45540
Os.8903.1.S1_at--959--1231Chr06:27560286..27560310 (25 bp)
AGTTGCTCTCATTACCTATCTTAAT
LOC_Os06g45540
Os.8903.1.S1_at--305--3691Chr06:27560301..27560325 (25 bp)
CTATCTTAATTGTAATCCCCTTATG
LOC_Os06g45540
Os.8903.1.S1_at--1142--8451Chr06:27560391..27560415 (25 bp)
TGGCCTTTGGCTGGCTAGGGTCACC
LOC_Os06g45540
Os.8903.1.S1_at--383--2651Chr06:27560461..27560485 (25 bp)
AACCAGCTAAGCTTGCAAACTCCTC
LOC_Os06g45540
Os.8903.1.S1_at--461--2211Chr06:27560492..27560516 (25 bp)
ACAAGACTAGGTAGGCACGGACTTT
LOC_Os06g45540
Os.8903.1.S1_at--182--4191Chr06:27560525..27560549 (25 bp)
CCCTGTGCAGGGACCCCAAAAGATT
LOC_Os06g45540
Target Sequence 
CCCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGT
CACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCT
CTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTG
TGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCNTCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGA
GAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGC
AGGGACCCCAAAAGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8903.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis