Browse Element(s) Details


OsAffx.15939.1.S1_at

Description tigr:9634.m04425
TID=OsAffx.15939.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4555011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g45540Os.8903.1.S1_at11/116+27556203..27560600zinc-binding protein, putative, expressed
LOC_Os06g45550OsAffx.15939.1.S1_at11/116+27571576..27572064hypothetical protein
LOC_Os06g45560NANA6+27582937..27589320retrotransposon protein, putative, unclassified
LOC_Os06g45570Os.55395.1.S1_s_at11/116+27593627..27594557VQ motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15939.1.S1_at--968--2971Chr06:27571643..27571667 (25 bp)
AATGGGAGGCTCTTTGTAGACCCAA
LOC_Os06g45550
OsAffx.15939.1.S1_at--745--7651Chr06:27571646..27571670 (25 bp)
GGGAGGCTCTTTGTAGACCCAAAGA
LOC_Os06g45550
OsAffx.15939.1.S1_at--903--7991Chr06:27571671..27571695 (25 bp)
GGATGGAGGACTAGGTTTTCTCAAC
LOC_Os06g45550
OsAffx.15939.1.S1_at--727--6171Chr06:27571676..27571700 (25 bp)
GAGGACTAGGTTTTCTCAACACCAA
LOC_Os06g45550
OsAffx.15939.1.S1_at--891--10311Chr06:27571687..27571711 (25 bp)
TTTCTCAACACCAAAATCATGAATG
LOC_Os06g45550
OsAffx.15939.1.S1_at--661--3071Chr06:27571701..27571725 (25 bp)
AATCATGAATGAGGCTCTTCTTTGT
LOC_Os06g45550
OsAffx.15939.1.S1_at--752--5271Chr06:27571707..27571727 (21 bp)
GAATGAGGCTCTTCTTTGTAATGGG
LOC_Os06g45550
OsAffx.15939.1.S1_at--515--9231Chr06:27571953..27571977 (25 bp)
TCCTTTAAAAATCATGTTCCCATAC
LOC_Os06g45550
OsAffx.15939.1.S1_at--305--6711Chr06:27571968..27571992 (25 bp)
GTTCCCATACATTTATAGCATCAGT
LOC_Os06g45550
OsAffx.15939.1.S1_at--512--551Chr06:27571997..27572021 (25 bp)
ATCCAGGGATGACGGTTAAGCAAGT
LOC_Os06g45550
OsAffx.15939.1.S1_at--1101--7971Chr06:27572003..27572027 (25 bp)
GGATGACGGTTAAGCAAGTGTATAA
LOC_Os06g45550
Target Sequence 
AATGGGAGGCTCTTTGTAGACCCAAAGAGGATGGAGGACTAGGTTTTCTCAACACCAAAATCATGAATGAGGCTCTTCTT
TGTAATGGGGCGGCCATCAGATTCTGGGATGACATCTGGATAGGGGAGGTTCCTTTAAAAATCATGTTCCCATACATTTA
TAGCATCAGTGCTGATCCAGGGATGACGGTTAAGCAAGTGTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15939.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis