Browse Element(s) Details


Os.9114.1.S1_at

Description gb:AK067672.1
DB_XREF= gi:32977690
TID=Os.9114.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013119K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119K24, full insert sequence.
FL= gb:AK059413.1 gb:AK067672.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2278011/11T-complex protein 1, delta subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22720OsAffx.8356.1.S1_x_at2/112+13533243..13538609retrotransposon protein, putative, unclassified
LOC_Os02g22730NANA2+13539575..13540274retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22740NANA2+13540933..13542582retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22750OsAffx.2718.1.S1_at11/112+13544713..13545168hypothetical protein
LOC_Os02g22760OsAffx.20848.1.S1_x_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22760OsAffx.30273.1.S1_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22770OsAffx.24391.1.S1_at11/112+13555768..13556195hypothetical protein
LOC_Os02g22780Os.9114.1.S1_at11/112+13560751..13565934T-complex protein 1, delta subunit, putative, expressed
LOC_Os02g22790OsAffx.22699.1.S1_x_at1/112+13572273..13578057retrotransposon protein, putative, unclassified
LOC_Os02g22800OsAffx.24392.1.S1_at10/112+13582299..13588851hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9114.1.S1_at--808--191Chr02:13561317..13561341 (25 bp)
ATTTCTATTGTGACTGAGCTTCGGA
LOC_Os02g22780
Os.9114.1.S1_at--845--8911Chr02:13561303..13561327 (25 bp)
TGAGCTTCGGAATCGTCATGCCAAG
LOC_Os02g22780
Os.9114.1.S1_at--570--3671Chr02:13561205..13561229 (25 bp)
CTTTGCTGGTGAGCACAAGCGCCAT
LOC_Os02g22780
Os.9114.1.S1_at--960--791Chr02:13561112..13561136 (25 bp)
ATGTGGCGGTTGACCATGTAGGCCT
LOC_Os02g22780
Os.9114.1.S1_at--212--9171Chr02:13561088..13561112 (25 bp)
TGCCCTACTTAGGTCTACGTGGGTT
LOC_Os02g22780
Os.9114.1.S1_at--174--10191Chr02:13561054..13561078 (25 bp)
TATTTGTTAGCGTGCCTTTCAGTCT
LOC_Os02g22780
Os.9114.1.S1_at--213--7171Chr02:13561033..13561057 (25 bp)
GTCTCTATGTTCTTAGCGTGTGGCT
LOC_Os02g22780
Os.9114.1.S1_at--475--8751Chr02:13560949..13560973 (25 bp)
TGTAGCCATCTGTTTGCACTTGAGA
LOC_Os02g22780
Os.9114.1.S1_at--371--5151Chr02:13560918..13560942 (25 bp)
GCAACGCCTTGCCATATTGTTTTAC
LOC_Os02g22780
Os.9114.1.S1_at--111--10331Chr02:13560874..13560898 (25 bp)
TTTCTTCGCATATTATCGGTCGCAC
LOC_Os02g22780
Os.9114.1.S1_at--992--2811Chr02:13560786..13560810 (25 bp)
AAGTATGTACATGGCGCTTCAAATA
LOC_Os02g22780
Target Sequence 
ATTTCTATTGTGACTGAGCTTCGGAATCGTCATGCCAAGGGTGAGAAGAATGCAGGCATCAATGTGAGGAAGGGTCAGAT
TACAAACATCCTGGAGGAGAACGTTGTGCAACCTTTGCTGGTGAGCACAAGCGCCATCACACTNGCTTGCGAGTGTGTTA
GAATGATACTGAAGATTGATGATATAGTCACTGTGAGGTAAGGTTATGTGGCGGTTGACCATGTAGGCCTGCCCTACTTA
GGTCTACGTGGGTTTTAGAATTTTATTTGTTAGCGTGCCTTTCAGTCTCTATGTTCTTAGCGTGTGGCTTTGATGTCTGT
CGAAGAGATTTATATTATGTATTTTGTTACCTGGATGGAACGGTCAAGTGTAGCCATCTGTTTGCACTTGAGACGGCCGG
CAACGCCTTGCCATATTGTTTTACACTTACAGTTTGCTGCAGATTTCTTCGCATATTATCGGTCGCACATTTGTANTTTG
CGNATGTGTCTATAGCTTGCTTTAACTCTCAAGATAACTGTTTGCATGGCAAAGTATGTACATGGCGCTTCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis