Browse Element(s) Details


OsAffx.20848.1.S1_x_at

Description gb:XM_354468.1
DB_XREF= gi:35191659
GEN=P0577B11.10
TID=OsAffx.20848.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g227601/11retrotransposon protein, putative, LINE subclass, expressed
LOC_Os03g445501/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g22700OsAffx.8215.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22700Os.47004.1.S1_at1/112+13522721..13527763retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22710OsAffx.12161.1.S1_at11/112+13530080..13532078hypothetical protein
LOC_Os02g22720OsAffx.8356.1.S1_x_at2/112+13533243..13538609retrotransposon protein, putative, unclassified
LOC_Os02g22730NANA2+13539575..13540274retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22740NANA2+13540933..13542582retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g22750OsAffx.2718.1.S1_at11/112+13544713..13545168hypothetical protein
LOC_Os02g22760OsAffx.20848.1.S1_x_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22760OsAffx.30273.1.S1_at1/112+13547151..13552610retrotransposon protein, putative, LINE subclass, expressed
LOC_Os02g22770OsAffx.24391.1.S1_at11/112+13555768..13556195hypothetical protein
LOC_Os02g22780Os.9114.1.S1_at11/112+13560751..13565934T-complex protein 1, delta subunit, putative, expressed
LOC_Os02g22790OsAffx.22699.1.S1_x_at1/112+13572273..13578057retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20848.1.S1_x_at--357--5392Chr08:3624916..3624940 (25 bp)
GAAGCAGCGGGACGACGGGCTGCTC
NONE
OsAffx.20848.1.S1_x_at--486--3791NONE
CTCGCCGTCGCAGGGTGAAAGCCGT
NONE
OsAffx.20848.1.S1_x_at--888--4491Chr08:3622026..3622050 (25 bp)
GCCGTGGCATGAAGCACATGGGCTT
NONE
OsAffx.20848.1.S1_x_at--972--4911Chr08:3622005..3622029 (25 bp)
GCTTCGCTAAAGATGGGCCTTGTTG
NONE
OsAffx.20848.1.S1_x_at--375--10631Chr08:3622003..3622027 (25 bp)
TTCGCTAAAGATGGGCCTTGTTGGA
NONE
OsAffx.20848.1.S1_x_at--228--8551Chr08:3621982..3622006 (25 bp)
TGGAGGGCCATACGGACGAAGATTG
NONE
OsAffx.20848.1.S1_x_at--874--4312Chr08:3621946..3621970 (25 bp)
CCTTGCTGCGAAGGGCACGGGTTTC
NONE
OsAffx.20848.1.S1_x_at--590--2732Chr11:15901924..15901948 (25 bp)
AAGAACCGGACCTCACTGGAAGAAG
NONE
OsAffx.20848.1.S1_x_at--1142--5311Chr08:3618790..3618812 (23 bp)
GAAGGTGGATCAGCTGGGCCCACAT
NONE
OsAffx.20848.1.S1_x_at--775--1051Chr08:3618788..3618812 (25 bp)
AGGTGGATCAGCTGGGCCCACATGT
NONE
OsAffx.20848.1.S1_x_at--757--7731Chr08:3618787..3618811 (25 bp)
GGTGGATCAGCTGGGCCCACATGTC
NONE
Target Sequence 
GAAGCAGCGGGACGACGGGCTGCTCCCCTCGCGGGCGCCGCTGCTCGCCGTCGCAGGGTGAAAGCCGTGGCATGAAGCAC
ATGGGCTTCGCTAAAGATGGGCCTTGTTGGAGGGCCATACGGACGAAGATTGCGGGGCGAAAGCCTTGCTGCGAAGGGCA
CGGGTTTCGCCAAGAACCGGACCTCACTGGAAGAAGGTGGATCAGCTGGGCCCACATGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20848.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis