Browse Element(s) Details


Os.9201.2.S1_x_at

Description gb:AK069606.1
DB_XREF= gi:32979630
TID=Os.9201.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9201 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024J22, full insert sequence.
FL= gb:AK069606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4001010/11Adenine phosphoribosyltransferase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40000Os.10224.1.S1_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40000OsAffx.24656.1.S1_s_at11/112+24190342..24195381Sedlin, N-terminal conserved region family protein, expressed
LOC_Os02g40010Os.9201.2.S1_x_at10/112+24217436..24222893Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os02g40020OsAffx.12421.1.S1_at11/112+24222964..24223346hypothetical protein
LOC_Os02g40030Os.10776.1.S1_at11/112+24229799..24233912UDP-sugar transporter sqv-7, putative, expressed
LOC_Os02g40040Os.17597.1.S1_at11/112+24234223..24236689expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006168biological_processadenine salvage
GO:0005829cellular_componentcytosol
GO:0003999molecular_functionadenine phosphoribosyltransferase activity
GO:0015114molecular_functionphosphate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9201.2.S1_x_at--1099--6851Chr02:24220087..24220111 (25 bp)
GTATGTTCTCGAGTACGGGACCGAT
LOC_Os02g40010
Os.9201.2.S1_x_at--998--7791Chr02:24220104..24220128 (25 bp)
GGACCGATTGCTTGCAGATGCATGT
LOC_Os02g40010
Os.9201.2.S1_x_at--1047--711Chr02:24220125..24220149 (25 bp)
ATGTTGGCGCCATTGAACCTGGTGA
LOC_Os02g40010
Os.9201.2.S1_x_at--419--2631Chr02:24220140..24220164 (25 bp)
AACCTGGTGAGCGTGTGCTGATCGT
LOC_Os02g40010
Os.9201.2.S1_x_at--40--9471Chr02:24220171..24220195 (25 bp)
TCTGGTTGCAACTGGTGGGACACTT
LOC_Os02g40010
Os.9201.2.S1_x_at--936--8131Chr02:24220188..24220212 (25 bp)
GGACACTTTGTGCTGCTATAAGGCT
LOC_Os02g40010
Os.9201.2.S1_x_at--609--10171NONE
TATAAGGCTTCTTGAACGCGCTGGA
NONE
Os.9201.2.S1_x_at--330--9031Chr02:24222598..24222622 (25 bp)
TGCACATGGCTTCATTCCTTACAAA
LOC_Os02g40010
Os.9201.2.S1_x_at--1150--1111Chr02:24222628..24222652 (25 bp)
AGTGAGCGCTGGACGGATATCGACA
LOC_Os02g40010
Os.9201.2.S1_x_at--427--10151Chr02:24222645..24222669 (25 bp)
TATCGACAAGTCTGCGGTACATTAT
LOC_Os02g40010
Os.9201.2.S1_x_at--391--1231Chr02:24222845..24222869 (25 bp)
AGTTCTGTTCTTCTTCCATTGTTGA
LOC_Os02g40010
Target Sequence 
GTATGTTCTCGAGTACGGGACCGATTGCTTGCAGATGCATGTTGGCGCCATTGAACCTGGTGAGCGTGTGCTGATCGTTG
ATGATCTGGTTGCAACTGGTGGGACACTTTGTGCTGCTATAAGGCTTCTTGAACGCGCTGGAGCTGACGTTGTTGAGTGC
GCGTGTCTCATTGGGCTCCCAAAATTTAAGGATTTCTACAAGCTCAATGGCAAACCAGTTTATGTGCTGGTGGAGTCNCG
CGAATATGAAAAATAAAGAGATTGATGATCAGGAATGCACATGGCTTCATTCCTTACAAATTGCAAGTGAGCGCTGGACG
GATATCGACAAGTCTGCGGTACATTATTAAGGCTAAGCTAGCTGCTAAGTATTAGAGGGGAGGTGAGAGAGAGNGAGAGA
GAGAGAGATTGGTGAGTGGGGAGTAGTTCTTGTAGGCTGAGTAGTACTAGTTTTTTCAGGGGCACTGAAAAAAGAGCTTG
TAGTTTCTGTCGNGAACACCGATTACTAGCTGAAACATCATCAGTTCTGTTCTTCTTCCATTGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9201.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis