Browse Element(s) Details


OsAffx.12421.1.S1_at

Description tigr:9630.m03860
TID=OsAffx.12421.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4002011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g40010Os.9201.2.S1_x_at10/112+24217436..24222893Adenine phosphoribosyltransferase 2, putative, expressed
LOC_Os02g40020OsAffx.12421.1.S1_at11/112+24222964..24223346hypothetical protein
LOC_Os02g40030Os.10776.1.S1_at11/112+24229799..24233912UDP-sugar transporter sqv-7, putative, expressed
LOC_Os02g40040Os.17597.1.S1_at11/112+24234223..24236689expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12421.1.S1_at--57--10311Chr02:24223260..24223284 (25 bp)
TTTCGATGCCGGAAGAGTCAGCGGC
LOC_Os02g40020
OsAffx.12421.1.S1_at--117--4271Chr02:24223252..24223276 (25 bp)
CCGGAAGAGTCAGCGGCAGCAGCAT
LOC_Os02g40020
OsAffx.12421.1.S1_at--509--1631Chr02:24223241..24223265 (25 bp)
AGCGGCAGCAGCATATCCTACCACT
LOC_Os02g40020
OsAffx.12421.1.S1_at--494--571Chr02:24223227..24223251 (25 bp)
ATCCTACCACTCCTTGGCTGAGAGA
LOC_Os02g40020
OsAffx.12421.1.S1_at--1142--4351Chr02:24223221..24223245 (25 bp)
CCACTCCTTGGCTGAGAGAGAAAGA
LOC_Os02g40020
OsAffx.12421.1.S1_at--235--2331Chr02:24223201..24223225 (25 bp)
AAAGAGAGCGTCGTCTGCCGAGCCG
LOC_Os02g40020
OsAffx.12421.1.S1_at--689--8211Chr02:24223177..24223201 (25 bp)
GGCAACCTGGTCACGAGTACGAGTG
LOC_Os02g40020
OsAffx.12421.1.S1_at--466--1771Chr02:24223173..24223197 (25 bp)
ACCTGGTCACGAGTACGAGTGTACA
LOC_Os02g40020
OsAffx.12421.1.S1_at--760--1851Chr02:24223159..24223183 (25 bp)
ACGAGTGTACAGTACGACCGTACGA
LOC_Os02g40020
OsAffx.12421.1.S1_at--463--3451Chr02:24223153..24223174 (22 bp)
CAGTACGACCGTACGAGGCAGGGCA
LOC_Os02g40020
OsAffx.12421.1.S1_at--199--1831Chr02:24222995..24223019 (25 bp)
ACGCCGACCACGACGCTGAAGCTGA
LOC_Os02g40020
Target Sequence 
TTTCGATGCCGGAAGAGTCAGCGGCAGCAGCATATCCTACCACTCCTTGGCTGAGAGAGAAAGAGAGCGTCGTCTGCCGA
GCCGGCAACCTGGTCACGAGTACGAGTGTACAGTACGACCGTACGAGGCAGGGCAGCACGTCGCCTGCGACGCCGACGCC
GACGCCGACGCCGACCACGACGCTGAAGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis