Browse Element(s) Details


Os.9372.1.S1_at

Description gb:AK073749.1
DB_XREF= gi:32983772
TID=Os.9372.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9372 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070M17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full insert sequence.
FL= gb:AK073749.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0561011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05580Os.4779.1.S1_at11/117+2612231..261462340S ribosomal protein S12, putative, expressed
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein
LOC_Os07g05600NANA7+2626653..2631386retrotransposon protein, putative, unclassified
LOC_Os07g05610Os.9372.1.S1_at11/117+2632631..2638789expressed protein
LOC_Os07g05620Os.27738.1.S1_at11/117+2641852..2646073CIPK-like protein 1, putative, expressed
LOC_Os07g05620Os.51613.1.S1_x_at1/117+2641852..2646073CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9372.1.S1_at--1072--9271Chr07:2633407..2633431 (25 bp)
TCCGGCTGGCAGCTTACAGTAGATG
LOC_Os07g05610
Os.9372.1.S1_at--185--5551Chr07:2633377..2633401 (25 bp)
GAAACTATCCAGTCTCTTGCTCAAG
LOC_Os07g05610
Os.9372.1.S1_at--981--9691Chr07:2633345..2633369 (25 bp)
TCAAATTATGCCGTCTGACTCTGCG
LOC_Os07g05610
Os.9372.1.S1_at--227--5711Chr07:2633329..2633353 (25 bp)
GACTCTGCGGCATCACTGTATAAGG
LOC_Os07g05610
Os.9372.1.S1_at--496--10731Chr07:2633154..2633178 (25 bp)
TTGAAGCTCCTCCTATACAGACATA
LOC_Os07g05610
Os.9372.1.S1_at--910--5671Chr07:2633038..2633159 (25 bp)
GACATACATTTGGTTCTGGCCACTG
LOC_Os07g05610
Os.9372.1.S1_at--1026--5911Chr07:2633002..2633026 (25 bp)
GAGCTTTGAAGCTATCCATGATCAG
LOC_Os07g05610
Os.9372.1.S1_at--116--6131Chr07:2632934..2632958 (25 bp)
GAGTGTAGATGAGTCTGCCTGGCCT
LOC_Os07g05610
Os.9372.1.S1_at--1125--6851Chr07:2632875..2632899 (25 bp)
GTATTTCGAACCTCTTTGTATCTAT
LOC_Os07g05610
Os.9372.1.S1_at--881--8951Chr07:2632808..2632832 (25 bp)
TGAACAACCTTGTCCTTTTTCGTCA
LOC_Os07g05610
Os.9372.1.S1_at--218--6851Chr07:2632736..2632760 (25 bp)
GTTTCCGTTGTATTTTGATTGCTAT
LOC_Os07g05610
Target Sequence 
TCCGGCTGGCAGCTTACAGTAGATGCACTGGAAACTATCCAGTCTCTTGCTCAAGCCCAAAATCAAATTATGCCGTCTGA
CTCTGCGGCATCACTGTATAAGGATGACCATGTGGCGCCTAGCCGCAAGCTGTTGAAAAGGGCTAGCCACAGCAAATGTT
AATTGAAGCTCCTCCTATACAGACATACATTTGGTTCTGGCCACTGACAGTCCAGAAGAGCTTTGAAGCTATCCATGATC
AGGTGGTGGAAGATGAATAAATTAAGCTTCAACTTAGTTATTGTAGAGTGTAGATGAGTCTGCCTGGCCTTTTGCCGAGT
TGTGCCCCCTTTGGTTGTATTTTTGTATTTCGAACCTCTTTGTATCTATTCAAGTTACAGACAGATTATCTAGTTAGTGA
GGCTAGAACTTTGAACAACCTTGTCCTTTTTCGTCAAAGACCTAACTGTGCAAATGTGCAACATTTTGTCCAATTAAGTA
TTAGTTTCCGTTGTATTTTGATTGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis