Browse Element(s) Details


Os.4779.1.S1_at

Description gb:AK121635.1
DB_XREF= gi:37991258
TID=Os.4779.1
CNT=55
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.4779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-019-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051C16, full insert sequence.
FL= gb:AK058680.1 gb:AK121635.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0558011/1140S ribosomal protein S12, putative, expressed
LOC_Os07g055001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05540OsAffx.5954.4.S1_x_at4/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.1.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.5.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.3.S1_x_at2/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.5954.2.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05540OsAffx.25503.1.S1_at1/117+2581399..2589517retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05550Os.49224.1.S1_at11/117+2594019..2597171expressed protein
LOC_Os07g05560OsAffx.5222.1.S1_at11/117+2597362..2599140pentatricopeptide, putative, expressed
LOC_Os07g05570Os.4890.1.S1_at11/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05570OsAffx.31218.1.S1_at1/117+2599490..2604517ERD4 protein, putative, expressed
LOC_Os07g05580Os.4779.1.S1_at11/117+2612231..261462340S ribosomal protein S12, putative, expressed
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein
LOC_Os07g05600NANA7+2626653..2631386retrotransposon protein, putative, unclassified
LOC_Os07g05610Os.9372.1.S1_at11/117+2632631..2638789expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4779.1.S1_at--646--4932Chr07:2613366..2613390 (25 bp)
GCTTGTGAAGGGTCTCCGTGAGGCT
LOC_Os07g05580
Os.4779.1.S1_at--594--4071Chr07:2613402..2613426 (25 bp)
CGAGAAGCATGCTGCTCAGCTTTGT
LOC_Os07g05580
Os.4779.1.S1_at--606--10111Chr07:2613457..2613481 (25 bp)
TATGTCAAGTTGGTTAAGGCTCTGT
LOC_Os07g05580
Os.4779.1.S1_at--43--6771Chr07:2613469..2613493 (25 bp)
GTTAAGGCTCTGTGTGCTGAGCACA
LOC_Os07g05580
Os.4779.1.S1_at--869--9111Chr07:2613483..2613507 (25 bp)
TGCTGAGCACAACGTTCACCTTGTT
LOC_Os07g05580
Os.4779.1.S1_at--136--5171Chr07:2614218..2614242 (25 bp)
GCAAGGAAGGTTGTGGGCTGCTCCT
LOC_Os07g05580
Os.4779.1.S1_at--44--3711Chr07:2614349..2614373 (25 bp)
CTATGGTGAAGAGTCTGAGGGCCTT
LOC_Os07g05580
Os.4779.1.S1_at--67--8611Chr07:2614364..2614388 (25 bp)
TGAGGGCCTTAACATAGTGCAGGAC
LOC_Os07g05580
Os.4779.1.S1_at--257--3051Chr07:2614396..2614420 (25 bp)
AATCGCACTAGATATAGCATTCTTA
LOC_Os07g05580
Os.4779.1.S1_at--557--111Chr07:2614414..2614438 (25 bp)
ATTCTTATATCCAGAACGTGTGCTC
LOC_Os07g05580
Os.4779.1.S1_at--124--9412Chr07:2614573..2614597 (25 bp)
TCGTCTGCTTTTAATACAAATCATC
LOC_Os07g05580
Target Sequence 
GCTTGTGAAGGGTCTCCGTGAGGCTGCCAAGGCCATCGAGAAGCATGCTGCTCAGCTTTGTGTGCTTGCTGAGGACTGCG
ACCAACCTGATTATGTCAAGTTGGTTAAGGCTCTGTGTGCTGAGCACAACGTTCACCTTGTTACCGTGCCTAGTGCTAAG
ACTCTTGGCGAGTGGGCAGGGCTTTGCAAGATTGACTCTGAGGGCAAGGCAAGGAAGGTTGTGGGCTGCTCCTGCGTCGT
TGTCAAGGACTATGGTGAAGAGTCTGAGGGCCTTAACATAGTGCAGGACTATGTCAAATCGCACTAGATATAGCATTCTT
ATATCCAGAACGTGTGCTCNACATTCTGTACCTTTTGTTTTAATTTATGCTTGGTTCTAGGGCTTGCTAGGAGATAAGAA
TTCTTTTCAAGTGCGAGCCAGGGAGATATGAGCAAAATTTGAACCTCTGAATTTATGTTTACCGTGCTGAAAATCGTCTG
CTTTTAATACAAATCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis